Analysis of interatomic Contacts of Structural Units in PDB entry:
6EEM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6EEM entry

There are 3 chains in PDB entry 6EEM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 17GLY 511
B
 GLN 17HIS 320
B
 TRP 322GLY 511
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 53 helices in PDB entry 6EEM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
21 43Right-handed alpha
Helix 2
AA2
A
44 46Right-handed 310
Helix 3
AA3
A
55 61Right-handed alpha
Helix 4
AA4
A
71 83Right-handed alpha
Helix 5
AA5
A
84 87Right-handed 310
Helix 6
AA6
A
104 118Right-handed alpha
Helix 7
AA7
A
127 146Right-handed alpha
Helix 8
AA8
A
148 152Right-handed 310
Helix 9
AA9
A
168 189Right-handed alpha
Helix 10
AB1
A
190 194Right-handed 310
Helix 11
AB2
A
205 215Right-handed alpha
Helix 12
AB3
A
218 220Right-handed 310
Helix 13
AB4
A
228 232Right-handed 310
Helix 14
AB5
A
236 250Right-handed alpha
Helix 15
AB6
A
271 281Right-handed alpha
Helix 16
AB7
A
292 298Right-handed 310
Helix 17
AB8
A
299 304Right-handed alpha
Helix 18
AB9
A
305 307Right-handed 310
Helix 19
AC1
A
308 312Right-handed 310
Helix 20
AC2
A
319 323Right-handed alpha
Helix 21
AC3
A
336 345Right-handed alpha
Helix 22
AC4
A
363 368Right-handed 310
Helix 23
AC5
A
376 388Right-handed alpha
Helix 24
AC6
A
388 412Right-handed alpha
Helix 25
AC7
A
433 436Right-handed 310
Helix 26
AC8
A
444 466Right-handed alpha
Helix 27
AC9
A
491 510Right-handed alpha
Helix 28
AD1
B
21 43Right-handed alpha
Helix 29
AD2
B
44 46Right-handed 310
Helix 30
AD3
B
55 61Right-handed alpha
Helix 31
AD4
B
71 82Right-handed alpha
Helix 32
AD5
B
83 87Right-handed 310
Helix 33
AD6
B
104 118Right-handed alpha
Helix 34
AD7
B
127 145Right-handed alpha
Helix 35
AD8
B
148 152Right-handed 310
Helix 36
AD9
B
168 189Right-handed alpha
Helix 37
AE1
B
190 194Right-handed 310
Helix 38
AE2
B
206 215Right-handed alpha
Helix 39
AE3
B
218 220Right-handed 310
Helix 40
AE4
B
228 232Right-handed 310
Helix 41
AE5
B
236 250Right-handed alpha
Helix 42
AE6
B
271 281Right-handed alpha
Helix 43
AE7
B
292 298Right-handed 310
Helix 44
AE8
B
299 304Right-handed alpha
Helix 45
AE9
B
305 307Right-handed 310
Helix 46
AF1
B
308 312Right-handed 310
Helix 47
AF2
B
319 323Right-handed alpha
Helix 48
AF3
B
336 345Right-handed alpha
Helix 49
AF4
B
363 368Right-handed 310
Helix 50
AF5
B
376 412Right-handed alpha
Helix 51
AF6
B
433 436Right-handed 310
Helix 52
AF7
B
444 466Right-handed alpha
Helix 53
AF8
B
491 511Right-handed alpha
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There are 4 sheets in PDB entry 6EEM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
162 166first strand
Strand 2
A
330 334anti-parallel
Strand 3
A
314 318anti-parallel
Strand 4
A
285 289parallel
Strand 5
A
253 260parallel
Strand 6
A
196 201parallel
Strand 7
A
222 225parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
416 418first strand
Strand 2
A
426 431anti-parallel
Strand 3
A
478 484anti-parallel
Strand 4
A
472 475anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
162 166first strand
Strand 2
B
330 334anti-parallel
Strand 3
B
314 318anti-parallel
Strand 4
B
285 289parallel
Strand 5
B
253 260parallel
Strand 6
B
196 201parallel
Strand 7
B
222 225parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
416 420first strand
Strand 2
B
426 431anti-parallel
Strand 3
B
478 484anti-parallel
Strand 4
B
471 475anti-parallel
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