Analysis of interatomic Contacts of Structural Units in PDB entry:
6EI1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6EI1 entry

There are 2 chains in PDB entry 6EI1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 240PRO 578
B
 MET 1GLY 75
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 6EI1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
240 267Right-handed alpha
Helix 2
AA2
A
274 289Right-handed alpha
Helix 3
AA3
A
293 311Right-handed alpha
Helix 4
AA4
A
321 333Right-handed alpha
Helix 5
AA5
A
359 374Right-handed alpha
Helix 6
AA6
A
375 377Right-handed 310
Helix 7
AA7
A
378 383Right-handed alpha
Helix 8
AA8
A
389 404Right-handed alpha
Helix 9
AA9
A
406 413Right-handed alpha
Helix 10
AB1
A
426 436Right-handed alpha
Helix 11
AB2
A
450 454Right-handed 310
Helix 12
AB3
A
455 467Right-handed alpha
Helix 13
AB4
A
516 521Right-handed alpha
Helix 14
AB5
A
522 525Right-handed 310
Helix 15
AB6
A
529 534Right-handed alpha
Helix 16
AB7
A
539 543Right-handed 310
Helix 17
AB8
A
558 569Right-handed alpha
Helix 18
AB9
B
22 35Right-handed alpha
Helix 19
AC1
B
37 39Right-handed 310
Helix 20
AC2
B
56 60Right-handed 310
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There are 5 sheets in PDB entry 6EI1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
318 319first strand
Strand 2
A
348 349anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
476 478first strand
Strand 2
A
337 342parallel
Strand 3
A
491 501anti-parallel
Strand 4
A
506 511anti-parallel
Strand 5
A
537 538anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
476 478first strand
Strand 2
A
337 342parallel
Strand 3
A
491 501anti-parallel
Strand 4
A
484 488anti-parallel
Strand 5
A
548 556anti-parallel
Strand 6
A
438 445anti-parallel
Strand 7
A
575 577parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
424 425first strand
Strand 2
B
74 75anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 16first strand
Strand 2
B
2 7anti-parallel
Strand 3
B
66 71parallel
Strand 4
B
41 45anti-parallel
Strand 5
B
48 49anti-parallel
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