Analysis of interatomic Contacts of Structural Units in PDB entry:
6EOP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6EOP entry

There are 9 chains in PDB entry 6EOP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 48	SER 707
A	HIS 709	VAL 897
B	LEU 48	SER 707
B	HIS 709	VAL 897
C	LEU 48	SER 707
C	HIS 709	VAL 897
D	SER 10	GLY 17
E	SER 10	GLY 17
F	SER 10	GLY 17

There are 62 helices in PDB entry 6EOP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	57	70	Right-handed alpha
Helix 2	AA2	A	149	159	Right-handed alpha
Helix 3	AA3	A	258	262	Right-handed 310
Helix 4	AA4	A	270	277	Right-handed alpha
Helix 5	AA5	A	320	324	Right-handed 310
Helix 6	AA6	A	367	372	Right-handed alpha
Helix 7	AA7	A	408	410	Right-handed 310
Helix 8	AA8	A	418	429	Right-handed alpha
Helix 9	AA9	A	686	695	Right-handed alpha
Helix 10	AB1	A	711	716	Right-handed alpha
Helix 11	AB2	A	717	719	Right-handed 310
Helix 12	AB3	A	725	741	Right-handed alpha
Helix 13	AB4	A	755	768	Right-handed alpha
Helix 14	AB5	A	783	787	Right-handed 310
Helix 15	AB6	A	788	797	Right-handed alpha
Helix 16	AB7	A	798	801	Right-handed 310
Helix 17	AB8	A	802	809	Right-handed alpha
Helix 18	AB9	A	810	818	Right-handed 310
Helix 19	AC1	A	838	851	Right-handed alpha
Helix 20	AC2	A	869	888	Right-handed alpha
Helix 21	AC3	A	890	896	Right-handed alpha
Helix 22	AC4	B	57	71	Right-handed alpha
Helix 23	AC5	B	72	76	Right-handed 310
Helix 24	AC6	B	149	159	Right-handed alpha
Helix 25	AC7	B	270	277	Right-handed alpha
Helix 26	AC8	B	320	324	Right-handed 310
Helix 27	AC9	B	367	372	Right-handed alpha
Helix 28	AD1	B	408	410	Right-handed 310
Helix 29	AD2	B	418	429	Right-handed alpha
Helix 30	AD3	B	686	695	Right-handed alpha
Helix 31	AD4	B	711	716	Right-handed alpha
Helix 32	AD5	B	717	719	Right-handed 310
Helix 33	AD6	B	725	741	Right-handed alpha
Helix 34	AD7	B	755	768	Right-handed alpha
Helix 35	AD8	B	783	787	Right-handed 310
Helix 36	AD9	B	788	797	Right-handed alpha
Helix 37	AE1	B	798	801	Right-handed 310
Helix 38	AE2	B	802	809	Right-handed alpha
Helix 39	AE3	B	810	818	Right-handed 310
Helix 40	AE4	B	838	851	Right-handed alpha
Helix 41	AE5	B	869	888	Right-handed alpha
Helix 42	AE6	B	890	897	Right-handed alpha
Helix 43	AE7	C	57	71	Right-handed alpha
Helix 44	AE8	C	149	159	Right-handed alpha
Helix 45	AE9	C	270	277	Right-handed alpha
Helix 46	AF1	C	320	324	Right-handed 310
Helix 47	AF2	C	367	372	Right-handed alpha
Helix 48	AF3	C	408	410	Right-handed 310
Helix 49	AF4	C	418	429	Right-handed alpha
Helix 50	AF5	C	686	696	Right-handed alpha
Helix 51	AF6	C	711	716	Right-handed alpha
Helix 52	AF7	C	717	719	Right-handed 310
Helix 53	AF8	C	725	741	Right-handed alpha
Helix 54	AF9	C	755	768	Right-handed alpha
Helix 55	AG1	C	783	787	Right-handed 310
Helix 56	AG2	C	788	797	Right-handed alpha
Helix 57	AG3	C	798	801	Right-handed 310
Helix 58	AG4	C	802	810	Right-handed alpha
Helix 59	AG5	C	811	818	Right-handed 310
Helix 60	AG6	C	838	851	Right-handed alpha
Helix 61	AG7	C	869	888	Right-handed alpha
Helix 62	AG8	C	890	896	Right-handed alpha

There are 35 sheets in PDB entry 6EOP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	49	50	first strand
Strand 2	A	660	667	parallel
Strand 3	A	698	702	parallel
Strand 4	A	645	651	anti-parallel
Strand 5	A	634	639	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	49	50	first strand
Strand 2	A	660	667	parallel
Strand 3	A	744	754	parallel
Strand 4	A	772	778	parallel
Strand 5	A	825	830	parallel
Strand 6	A	856	860	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	81	87	first strand
Strand 2	A	95	103	anti-parallel
Strand 3	A	112	119	anti-parallel
Strand 4	A	133	134	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	170	171	first strand
Strand 2	A	177	182	anti-parallel
Strand 3	A	185	190	anti-parallel
Strand 4	A	205	206	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	215	220	first strand
Strand 2	A	227	232	anti-parallel
Strand 3	A	235	240	anti-parallel
Strand 4	A	246	248	anti-parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	290	291	first strand
Strand 2	A	412	414	first strand
Strand 3	A	264	268	first strand
Strand 4	A	281	285	anti-parallel
Strand 5	A	297	307	anti-parallel
Strand 6	A	340	350	anti-parallel
Strand 7	A	356	364	anti-parallel
Strand 8	A	412	414	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	313	317	first strand
Strand 2	A	326	330	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	375	383	first strand
Strand 2	A	390	396	anti-parallel
Strand 3	A	401	407	anti-parallel
Strand 4	A	436	442	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	453	455	first strand
Strand 2	A	463	470	anti-parallel
Strand 3	A	478	485	anti-parallel
Strand 4	A	508	513	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	530	532	first strand
Strand 2	A	537	542	anti-parallel
Strand 3	A	551	556	anti-parallel
Strand 4	A	564	565	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	572	577	first strand
Strand 2	A	583	589	anti-parallel
Strand 3	A	596	603	anti-parallel
Strand 4	A	613	621	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	49	50	first strand
Strand 2	B	660	667	parallel
Strand 3	B	698	702	parallel
Strand 4	B	645	651	anti-parallel
Strand 5	B	634	639	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	49	50	first strand
Strand 2	B	660	667	parallel
Strand 3	B	744	754	parallel
Strand 4	B	774	778	parallel
Strand 5	B	825	830	parallel
Strand 6	B	856	860	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	81	87	first strand
Strand 2	B	95	103	anti-parallel
Strand 3	B	112	119	anti-parallel
Strand 4	B	133	134	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	170	172	first strand
Strand 2	B	177	182	anti-parallel
Strand 3	B	185	190	anti-parallel
Strand 4	B	205	206	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	216	221	first strand
Strand 2	B	224	232	anti-parallel
Strand 3	B	235	240	anti-parallel
Strand 4	B	246	248	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	264	266	first strand
Strand 2	B	297	307	anti-parallel
Strand 3	B	290	291	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	283	285	first strand
Strand 2	B	297	307	anti-parallel
Strand 3	B	340	350	anti-parallel
Strand 4	B	356	364	anti-parallel
Strand 5	B	412	414	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	313	317	first strand
Strand 2	B	326	330	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	375	383	first strand
Strand 2	B	390	396	anti-parallel
Strand 3	B	401	407	anti-parallel
Strand 4	B	436	442	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	453	455	first strand
Strand 2	B	463	470	anti-parallel
Strand 3	B	478	485	anti-parallel
Strand 4	B	508	513	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	530	532	first strand
Strand 2	B	537	542	anti-parallel
Strand 3	B	551	556	anti-parallel
Strand 4	B	564	565	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	572	577	first strand
Strand 2	B	583	589	anti-parallel
Strand 3	B	596	603	anti-parallel
Strand 4	B	613	621	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	49	50	first strand
Strand 2	C	660	667	parallel
Strand 3	C	698	702	parallel
Strand 4	C	645	651	anti-parallel
Strand 5	C	634	639	anti-parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	49	50	first strand
Strand 2	C	660	667	parallel
Strand 3	C	744	754	parallel
Strand 4	C	772	778	parallel
Strand 5	C	825	830	parallel
Strand 6	C	856	860	parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	81	87	first strand
Strand 2	C	95	103	anti-parallel
Strand 3	C	112	119	anti-parallel
Strand 4	C	133	134	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	169	171	first strand
Strand 2	C	177	182	anti-parallel
Strand 3	C	185	190	anti-parallel
Strand 4	C	205	206	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	215	221	first strand
Strand 2	C	224	232	anti-parallel
Strand 3	C	235	240	anti-parallel
Strand 4	C	246	248	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	264	266	first strand
Strand 2	C	297	307	anti-parallel
Strand 3	C	290	291	anti-parallel

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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	283	285	first strand
Strand 2	C	297	307	anti-parallel
Strand 3	C	340	350	anti-parallel
Strand 4	C	356	364	anti-parallel
Strand 5	C	412	414	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	313	317	first strand
Strand 2	C	326	330	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	375	383	first strand
Strand 2	C	390	396	anti-parallel
Strand 3	C	401	407	anti-parallel
Strand 4	C	436	442	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	453	455	first strand
Strand 2	C	463	470	anti-parallel
Strand 3	C	478	485	anti-parallel
Strand 4	C	508	513	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	530	532	first strand
Strand 2	C	537	542	anti-parallel
Strand 3	C	551	556	anti-parallel
Strand 4	C	564	565	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	572	577	first strand
Strand 2	C	583	589	anti-parallel
Strand 3	C	596	603	anti-parallel
Strand 4	C	613	621	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6EOP

Analysis of interatomic Contacts of Structural Units in PDB entry:
6EOP