Analysis of interatomic Contacts of Structural Units in PDB entry:
6F0T

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6F0T entry

There are 3 chains in PDB entry 6F0T (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 1	ALA 251
B	SER 1	ALA 251
C	SER 1	ALA 251

There are 15 helices in PDB entry 6F0T. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	31	34	Right-handed 310
Helix 2	AA2	A	73	76	Right-handed 310
Helix 3	AA3	A	157	160	Right-handed 310
Helix 4	AA4	A	241	244	Right-handed 310
Helix 5	AA5	B	73	76	Right-handed 310
Helix 6	AA6	B	115	118	Right-handed 310
Helix 7	AA7	B	157	160	Right-handed 310
Helix 8	AA8	B	199	202	Right-handed 310
Helix 9	AA9	B	241	244	Right-handed 310
Helix 10	AB1	C	31	34	Right-handed 310
Helix 11	AB2	C	73	76	Right-handed 310
Helix 12	AB3	C	115	118	Right-handed 310
Helix 13	AB4	C	157	160	Right-handed 310
Helix 14	AB5	C	199	202	Right-handed 310
Helix 15	AB6	C	241	244	Right-handed 310

There are 17 sheets in PDB entry 6F0T. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	5	6	first strand
Strand 2	A	245	249	anti-parallel
Strand 3	A	236	240	anti-parallel
Strand 4	A	229	230	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	19	20	first strand
Strand 2	A	26	30	anti-parallel
Strand 3	A	35	39	anti-parallel
Strand 4	A	47	48	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	61	62	first strand
Strand 2	A	68	72	anti-parallel
Strand 3	A	77	81	anti-parallel
Strand 4	A	89	90	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	99	104	first strand
Strand 2	A	110	114	anti-parallel
Strand 3	A	119	123	anti-parallel
Strand 4	A	130	132	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	145	146	first strand
Strand 2	A	152	156	anti-parallel
Strand 3	A	161	165	anti-parallel
Strand 4	A	171	174	anti-parallel
Strand 5	C	214	216	parallel
Strand 6	C	203	207	anti-parallel
Strand 7	C	194	198	anti-parallel
Strand 8	C	186	188	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	183	188	first strand
Strand 2	A	194	198	anti-parallel
Strand 3	A	203	207	anti-parallel
Strand 4	A	215	216	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	6	first strand
Strand 2	B	245	249	anti-parallel
Strand 3	B	236	240	anti-parallel
Strand 4	B	229	230	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	15	20	first strand
Strand 2	B	26	30	anti-parallel
Strand 3	B	35	39	anti-parallel
Strand 4	B	47	48	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	61	62	first strand
Strand 2	B	68	72	anti-parallel
Strand 3	B	77	81	anti-parallel
Strand 4	B	89	90	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	103	104	first strand
Strand 2	B	110	114	anti-parallel
Strand 3	B	119	123	anti-parallel
Strand 4	B	131	132	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	145	146	first strand
Strand 2	B	152	156	anti-parallel
Strand 3	B	161	165	anti-parallel
Strand 4	B	173	174	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	188	first strand
Strand 2	B	194	198	anti-parallel
Strand 3	B	203	207	anti-parallel
Strand 4	B	215	216	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	5	6	first strand
Strand 2	C	245	249	anti-parallel
Strand 3	C	236	240	anti-parallel
Strand 4	C	228	230	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	19	20	first strand
Strand 2	C	26	30	anti-parallel
Strand 3	C	35	39	anti-parallel
Strand 4	C	46	48	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	60	62	first strand
Strand 2	C	68	72	anti-parallel
Strand 3	C	77	81	anti-parallel
Strand 4	C	89	90	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	102	104	first strand
Strand 2	C	110	114	anti-parallel
Strand 3	C	119	123	anti-parallel
Strand 4	C	130	132	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	145	146	first strand
Strand 2	C	152	156	anti-parallel
Strand 3	C	161	165	anti-parallel
Strand 4	C	172	174	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6F0T

Analysis of interatomic Contacts of Structural Units in PDB entry:
6F0T