Analysis of interatomic Contacts of Structural Units in PDB entry:
6FD3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6FD3 entry

There are 2 chains in PDB entry 6FD3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 260SER 435
A
 MET 437ASN 556
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 17 helices in PDB entry 6FD3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
262 274Right-handed alpha
Helix 2
AA2
A
278 281Right-handed 310
Helix 3
AA3
A
317 319Right-handed 310
Helix 4
AA4
A
323 335Right-handed alpha
Helix 5
AA5
A
364 372Right-handed alpha
Helix 6
AA6
A
375 396Right-handed alpha
Helix 7
AA7
A
404 406Right-handed 310
Helix 8
AA8
A
440 444Right-handed 310
Helix 9
AA9
A
445 450Right-handed alpha
Helix 10
AB1
A
457 473Right-handed alpha
Helix 11
AB2
A
481 493Right-handed alpha
Helix 12
AB3
A
499 503Right-handed 310
Helix 13
AB4
A
504 515Right-handed alpha
Helix 14
AB5
A
524 529Right-handed alpha
Helix 15
AB6
A
530 537Right-handed 310
Helix 16
AB7
A
539 542Right-handed 310
Helix 17
AB8
A
543 556Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 6FD3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
283 291first strand
Strand 2
A
295 302anti-parallel
Strand 3
A
308 315anti-parallel
Strand 4
A
352 358anti-parallel
Strand 5
A
343 349anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
398 399first strand
Strand 2
A
425 426anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
408 410first strand
Strand 2
A
416 418anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il