Analysis of interatomic Contacts of Structural Units in PDB entry:
6FQS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6FQS entry

There are 5 chains in PDB entry 6FQS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
LYS 417ALA 640
A
ASN 10LEU 490
D
LYS 417TYR 639
C
ASN 10ARG 122
C
THR 124ALA 407
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 59 helices in PDB entry 6FQS. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
B
436 447Right-handed alpha
Helix 2
AA2
B
463 467Right-handed 310
Helix 3
AA3
B
468 475Right-handed alpha
Helix 4
AA4
B
475 486Right-handed alpha
Helix 5
AA5
B
489 493Right-handed 310
Helix 6
AA6
B
494 498Right-handed 310
Helix 7
AA7
B
510 528Right-handed alpha
Helix 8
AA8
B
528 535Right-handed alpha
Helix 9
AA9
B
587 596Right-handed alpha
Helix 10
AB1
B
610 623Right-handed alpha
Helix 11
AB2
B
625 637Right-handed alpha
Helix 12
AB3
A
14 33Right-handed alpha
Helix 13
AB4
A
43 57Right-handed alpha
Helix 14
AB5
A
67 78Right-handed alpha
Helix 15
AB6
A
82 93Right-handed alpha
Helix 16
AB7
A
120 123Right-handed 310
Helix 17
AB8
A
129 134Right-handed alpha
Helix 18
AB9
A
165 171Right-handed alpha
Helix 19
AC1
A
187 201Right-handed alpha
Helix 20
AC2
A
205 213Right-handed alpha
Helix 21
AC3
A
227 237Right-handed alpha
Helix 22
AC4
A
269 283Right-handed alpha
Helix 23
AC5
A
313 325Right-handed alpha
Helix 24
AC6
A
347 390Right-handed alpha
Helix 25
AC7
A
390 401Right-handed alpha
Helix 26
AC8
A
403 416Right-handed alpha
Helix 27
AC9
A
418 428Right-handed alpha
Helix 28
AD1
A
429 433Right-handed 310
Helix 29
AD2
A
434 461Right-handed alpha
Helix 30
AD3
A
461 481Right-handed alpha
Helix 31
AD4
D
425 429Right-handed 310
Helix 32
AD5
D
436 447Right-handed alpha
Helix 33
AD6
D
470 475Right-handed alpha
Helix 34
AD7
D
476 486Right-handed alpha
Helix 35
AD8
D
489 493Right-handed 310
Helix 36
AD9
D
510 528Right-handed alpha
Helix 37
AE1
D
528 535Right-handed alpha
Helix 38
AE2
D
587 596Right-handed alpha
Helix 39
AE3
D
610 623Right-handed alpha
Helix 40
AE4
D
625 637Right-handed alpha
Helix 41
AE5
C
14 33Right-handed alpha
Helix 42
AE6
C
43 57Right-handed alpha
Helix 43
AE7
C
67 78Right-handed alpha
Helix 44
AE8
C
82 94Right-handed alpha
Helix 45
AE9
C
120 123Right-handed 310
Helix 46
AF1
C
129 137Right-handed alpha
Helix 47
AF2
C
165 171Right-handed alpha
Helix 48
AF3
C
187 200Right-handed alpha
Helix 49
AF4
C
205 210Right-handed alpha
Helix 50
AF5
C
227 237Right-handed alpha
Helix 51
AF6
C
269 283Right-handed alpha
Helix 52
AF7
C
313 325Right-handed alpha
Helix 53
AF8
C
347 390Right-handed alpha
Helix 54
AF9
C
390 401Right-handed alpha
Helix 55
AG1
C
403 416Right-handed alpha
Helix 56
AG2
C
418 428Right-handed alpha
Helix 57
AG3
C
429 433Right-handed 310
Helix 58
AG4
C
434 460Right-handed alpha
Helix 59
AG5
C
461 481Right-handed alpha
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There are 14 sheets in PDB entry 6FQS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
452 457first strand
Strand 2
B
430 435parallel
Strand 3
B
502 506parallel
Strand 4
B
537 539parallel
Strand 5
B
604 607anti-parallel
Strand 6
A
11 13parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
65 66first strand
Strand 2
A
125 128anti-parallel
Strand 3
A
104 107anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
146 148first strand
Strand 2
A
155 157anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
172 175first strand
Strand 2
A
180 183anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
328 334first strand
Strand 2
A
238 244anti-parallel
Strand 3
A
223 225anti-parallel
Strand 4
A
487 489parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
246 253first strand
Strand 2
A
256 263anti-parallel
Strand 3
A
304 308anti-parallel
Strand 4
A
289 294anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
336 339first strand
Strand 2
A
342 345anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
452 457first strand
Strand 2
D
430 435parallel
Strand 3
D
503 506parallel
Strand 4
D
537 539parallel
Strand 5
D
604 607anti-parallel
Strand 6
C
11 13parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
65 66first strand
Strand 2
C
125 128anti-parallel
Strand 3
C
104 107anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
146 148first strand
Strand 2
C
155 157anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
172 175first strand
Strand 2
C
180 183anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
328 334first strand
Strand 2
C
238 244anti-parallel
Strand 3
C
223 225anti-parallel
Strand 4
C
487 489parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
246 251first strand
Strand 2
C
257 263anti-parallel
Strand 3
C
304 308anti-parallel
Strand 4
C
289 294anti-parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
336 339first strand
Strand 2
C
342 345anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il