Analysis of interatomic Contacts of Structural Units in PDB entry:
6FSD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6FSD entry

There are 2 chains in PDB entry 6FSD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLU 1ALA 542
B
GLU 4THR 543
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 51 helices in PDB entry 6FSD. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
42 46Right-handed 310
Helix 2
AA2
A
80 85Right-handed alpha
Helix 3
AA3
A
130 134Right-handed 310
Helix 4
AA4
A
135 142Right-handed alpha
Helix 5
AA5
A
153 159Right-handed alpha
Helix 6
AA6
A
170 187Right-handed alpha
Helix 7
AA7
A
188 190Right-handed 310
Helix 8
AA8
A
203 215Right-handed alpha
Helix 9
AA9
A
216 219Right-handed 310
Helix 10
AB1
A
240 255Right-handed alpha
Helix 11
AB2
A
266 274Right-handed alpha
Helix 12
AB3
A
277 285Right-handed alpha
Helix 13
AB4
A
286 289Right-handed 310
Helix 14
AB5
A
311 319Right-handed alpha
Helix 15
AB6
A
335 340Right-handed alpha
Helix 16
AB7
A
355 367Right-handed alpha
Helix 17
AB8
A
371 383Right-handed alpha
Helix 18
AB9
A
390 407Right-handed alpha
Helix 19
AC1
A
407 421Right-handed alpha
Helix 20
AC2
A
440 444Right-handed 310
Helix 21
AC3
A
450 455Right-handed alpha
Helix 22
AC4
A
456 464Right-handed 310
Helix 23
AC5
A
466 487Right-handed alpha
Helix 24
AC6
A
525 534Right-handed alpha
Helix 25
AC7
A
534 541Right-handed alpha
Helix 26
AC8
B
5 7Right-handed 310
Helix 27
AC9
B
42 46Right-handed 310
Helix 28
AD1
B
80 85Right-handed alpha
Helix 29
AD2
B
130 134Right-handed 310
Helix 30
AD3
B
135 143Right-handed alpha
Helix 31
AD4
B
153 159Right-handed alpha
Helix 32
AD5
B
170 187Right-handed alpha
Helix 33
AD6
B
188 190Right-handed 310
Helix 34
AD7
B
203 214Right-handed alpha
Helix 35
AD8
B
215 221Right-handed 310
Helix 36
AD9
B
241 255Right-handed alpha
Helix 37
AE1
B
266 275Right-handed alpha
Helix 38
AE2
B
277 283Right-handed alpha
Helix 39
AE3
B
284 289Right-handed 310
Helix 40
AE4
B
311 319Right-handed alpha
Helix 41
AE5
B
335 340Right-handed alpha
Helix 42
AE6
B
355 367Right-handed alpha
Helix 43
AE7
B
371 383Right-handed alpha
Helix 44
AE8
B
390 407Right-handed alpha
Helix 45
AE9
B
407 421Right-handed alpha
Helix 46
AF1
B
440 444Right-handed 310
Helix 47
AF2
B
450 455Right-handed alpha
Helix 48
AF3
B
456 464Right-handed 310
Helix 49
AF4
B
466 487Right-handed alpha
Helix 50
AF5
B
525 534Right-handed alpha
Helix 51
AF6
B
534 541Right-handed alpha
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There are 7 sheets in PDB entry 6FSD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
9 12first strand
Strand 2
A
15 18anti-parallel
Strand 3
A
59 61parallel
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There are 11 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
20 24first strand
Strand 2
A
27 36anti-parallel
Strand 3
A
98 104anti-parallel
Strand 4
A
145 149anti-parallel
Strand 5
A
112 118parallel
Strand 6
A
192 202parallel
Strand 7
A
224 228parallel
Strand 8
A
325 331parallel
Strand 9
A
424 430parallel
Strand 10
A
509 513parallel
Strand 11
A
519 522anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
68 69first strand
Strand 2
A
92 93parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
9 12first strand
Strand 2
B
15 18anti-parallel
Strand 3
B
59 61parallel
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There are 11 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
20 24first strand
Strand 2
B
27 36anti-parallel
Strand 3
B
98 104anti-parallel
Strand 4
B
145 149anti-parallel
Strand 5
B
112 118parallel
Strand 6
B
192 202parallel
Strand 7
B
224 228parallel
Strand 8
B
325 331parallel
Strand 9
B
424 430parallel
Strand 10
B
509 513parallel
Strand 11
B
519 522anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
68 69first strand
Strand 2
B
92 93parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
239 240first strand
Strand 2
B
302 303parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il