Analysis of interatomic Contacts of Structural Units in PDB entry:
6G6W


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6G6W entry

There are 2 chains in PDB entry 6G6W (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 17LYS 1028
B
 ASP 440GLY 599
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 44 helices in PDB entry 6G6W. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
41 54Right-handed alpha
Helix 2
AA2
A
58 62Right-handed 310
Helix 3
AA3
A
64 66Right-handed 310
Helix 4
AA4
A
88 93Right-handed alpha
Helix 5
AA5
A
107 122Right-handed alpha
Helix 6
AA6
A
124 131Right-handed alpha
Helix 7
AA7
A
133 157Right-handed alpha
Helix 8
AA8
A
158 167Right-handed alpha
Helix 9
AA9
A
212 227Right-handed alpha
Helix 10
AB1
A
255 258Right-handed 310
Helix 11
AB2
A
259 269Right-handed alpha
Helix 12
AB3
A
279 288Right-handed alpha
Helix 13
AB4
A
315 319Right-handed 310
Helix 14
AB5
A
382 384Right-handed 310
Helix 15
AB6
A
487 496Right-handed alpha
Helix 16
AB7
A
506 516Right-handed alpha
Helix 17
AB8
A
524 534Right-handed alpha
Helix 18
AB9
A
534 542Right-handed alpha
Helix 19
AC1
A
545 553Right-handed alpha
Helix 20
AC2
A
557 570Right-handed alpha
Helix 21
AC3
A
575 583Right-handed alpha
Helix 22
AC4
A
589 601Right-handed alpha
Helix 23
AC5
A
604 619Right-handed alpha
Helix 24
AC6
A
620 622Right-handed 310
Helix 25
AC7
A
627 640Right-handed alpha
Helix 26
AC8
A
640 653Right-handed alpha
Helix 27
AC9
A
657 674Right-handed alpha
Helix 28
AD1
A
675 706Right-handed alpha
Helix 29
AD2
A
707 721Right-handed alpha
Helix 30
AD3
A
721 729Right-handed alpha
Helix 31
AD4
A
784 803Right-handed alpha
Helix 32
AD5
A
834 838Right-handed alpha
Helix 33
AD6
A
854 863Right-handed alpha
Helix 34
AD7
A
864 866Right-handed 310
Helix 35
AD8
A
867 889Right-handed alpha
Helix 36
AD9
A
935 943Right-handed alpha
Helix 37
AE1
A
949 970Right-handed alpha
Helix 38
AE2
A
970 982Right-handed alpha
Helix 39
AE3
A
983 985Right-handed 310
Helix 40
AE4
A
991 1002Right-handed alpha
Helix 41
AE5
A
1007 1026Right-handed alpha
Helix 42
AE6
B
441 507Right-handed alpha
Helix 43
AE7
B
520 588Right-handed alpha
Helix 44
AE8
B
590 598Right-handed alpha
Back to top of page

There are 9 sheets in PDB entry 6G6W. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 37first strand
Strand 2
A
19 25anti-parallel
Strand 3
A
98 103parallel
Strand 4
A
68 73anti-parallel
Strand 5
A
79 81anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
203 208first strand
Strand 2
A
189 196anti-parallel
Strand 3
A
273 278parallel
Strand 4
A
239 243anti-parallel
Strand 5
A
249 250anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
370 380first strand
Strand 2
A
322 331anti-parallel
Strand 3
A
470 475anti-parallel
Strand 4
A
435 440anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
352 353first strand
Strand 2
A
340 349anti-parallel
Strand 3
A
363 364anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
352 353first strand
Strand 2
A
340 349anti-parallel
Strand 3
A
389 397anti-parallel
Strand 4
A
416 424anti-parallel
Strand 5
A
442 443anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
731 732first strand
Strand 2
A
740 741anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
743 744first strand
Strand 2
A
759 764anti-parallel
Strand 3
A
750 751anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
743 744first strand
Strand 2
A
759 764anti-parallel
Strand 3
A
774 780anti-parallel
Strand 4
A
822 826anti-parallel
Strand 5
A
815 819anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
831 833first strand
Strand 2
A
899 902anti-parallel
Strand 3
A
907 909anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il