Analysis of interatomic Contacts of Structural Units in PDB entry:
6G78


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6G78 entry

There are 2 chains in PDB entry 6G78 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 51PRO 349
B
 VAL 51PRO 349
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 6G78. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
69 71Right-handed 310
Helix 2
AA2
A
126 130Right-handed alpha
Helix 3
AA3
A
160 166Right-handed alpha
Helix 4
AA4
A
171 191Right-handed alpha
Helix 5
AA5
A
200 202Right-handed 310
Helix 6
AA6
A
236 240Right-handed 310
Helix 7
AA7
A
241 246Right-handed alpha
Helix 8
AA8
A
251 269Right-handed alpha
Helix 9
AA9
A
277 288Right-handed alpha
Helix 10
AB1
A
297 308Right-handed alpha
Helix 11
AB2
A
321 326Right-handed alpha
Helix 12
AB3
A
327 331Right-handed 310
Helix 13
AB4
A
334 340Right-handed alpha
Helix 14
AB5
B
69 71Right-handed 310
Helix 15
AB6
B
126 130Right-handed alpha
Helix 16
AB7
B
160 166Right-handed alpha
Helix 17
AB8
B
171 192Right-handed alpha
Helix 18
AB9
B
200 202Right-handed 310
Helix 19
AC1
B
236 240Right-handed 310
Helix 20
AC2
B
241 246Right-handed alpha
Helix 21
AC3
B
251 269Right-handed alpha
Helix 22
AC4
B
277 288Right-handed alpha
Helix 23
AC5
B
297 308Right-handed alpha
Helix 24
AC6
B
320 326Right-handed alpha
Helix 25
AC7
B
327 331Right-handed 310
Helix 26
AC8
B
334 340Right-handed alpha
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There are 6 sheets in PDB entry 6G78. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 56first strand
Strand 2
A
101 115anti-parallel
Strand 3
A
85 92anti-parallel
Strand 4
A
73 82anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 61first strand
Strand 2
A
138 144anti-parallel
Strand 3
A
147 153anti-parallel
Strand 4
A
101 115anti-parallel
Strand 5
A
219 223anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
158 159first strand
Strand 2
A
204 206anti-parallel
Strand 3
A
212 214anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
52 57first strand
Strand 2
B
109 115anti-parallel
Strand 3
B
219 222anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 61first strand
Strand 2
B
138 143anti-parallel
Strand 3
B
148 152anti-parallel
Strand 4
B
101 107anti-parallel
Strand 5
B
85 92anti-parallel
Strand 6
B
73 82anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
158 159first strand
Strand 2
B
204 206anti-parallel
Strand 3
B
212 214anti-parallel
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