Analysis of interatomic Contacts of Structural Units in PDB entry:
6GDY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6GDY entry

There are 2 chains in PDB entry 6GDY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
MET 1GLU 334
B
MET 1GLU 334
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 46 helices in PDB entry 6GDY. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
2 17Right-handed alpha
Helix 2
AA2
A
22 28Right-handed alpha
Helix 3
AA3
A
30 35Right-handed alpha
Helix 4
AA4
A
38 42Right-handed 310
Helix 5
AA5
A
52 54Right-handed 310
Helix 6
AA6
A
55 63Right-handed alpha
Helix 7
AA7
A
80 85Right-handed alpha
Helix 8
AA8
A
86 94Right-handed alpha
Helix 9
AA9
A
114 122Right-handed alpha
Helix 10
AB1
A
136 140Right-handed 310
Helix 11
AB2
A
142 150Right-handed 310
Helix 12
AB3
A
153 157Right-handed 310
Helix 13
AB4
A
159 165Right-handed 310
Helix 14
AB5
A
189 193Right-handed 310
Helix 15
AB6
A
214 219Right-handed alpha
Helix 16
AB7
A
221 226Right-handed alpha
Helix 17
AB8
A
227 229Right-handed 310
Helix 18
AB9
A
231 239Right-handed alpha
Helix 19
AC1
A
239 244Right-handed alpha
Helix 20
AC2
A
249 253Right-handed 310
Helix 21
AC3
A
293 305Right-handed alpha
Helix 22
AC4
A
305 320Right-handed alpha
Helix 23
AC5
A
320 333Right-handed alpha
Helix 24
AC6
B
2 17Right-handed alpha
Helix 25
AC7
B
22 28Right-handed alpha
Helix 26
AC8
B
30 35Right-handed alpha
Helix 27
AC9
B
38 42Right-handed 310
Helix 28
AD1
B
52 54Right-handed 310
Helix 29
AD2
B
55 63Right-handed alpha
Helix 30
AD3
B
80 85Right-handed alpha
Helix 31
AD4
B
86 94Right-handed alpha
Helix 32
AD5
B
114 124Right-handed alpha
Helix 33
AD6
B
136 140Right-handed 310
Helix 34
AD7
B
142 150Right-handed 310
Helix 35
AD8
B
153 157Right-handed 310
Helix 36
AD9
B
159 165Right-handed 310
Helix 37
AE1
B
189 193Right-handed 310
Helix 38
AE2
B
214 219Right-handed alpha
Helix 39
AE3
B
221 226Right-handed alpha
Helix 40
AE4
B
227 229Right-handed 310
Helix 41
AE5
B
231 239Right-handed alpha
Helix 42
AE6
B
239 244Right-handed alpha
Helix 43
AE7
B
249 253Right-handed 310
Helix 44
AE8
B
293 305Right-handed alpha
Helix 45
AE9
B
305 320Right-handed alpha
Helix 46
AF1
B
320 334Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 6GDY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
48 50first strand
Strand 2
A
70 73parallel
Strand 3
A
264 267anti-parallel
Strand 4
A
194 201anti-parallel
Strand 5
A
281 288anti-parallel
Strand 6
A
173 178anti-parallel
Strand 7
A
132 134anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
98 103first strand
Strand 2
A
109 113anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
183 187first strand
Strand 2
A
272 277anti-parallel
Strand 3
A
204 209anti-parallel
Strand 4
A
255 259anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
48 50first strand
Strand 2
B
70 73parallel
Strand 3
B
264 267anti-parallel
Strand 4
B
194 201anti-parallel
Strand 5
B
281 288anti-parallel
Strand 6
B
173 178anti-parallel
Strand 7
B
132 134anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
98 103first strand
Strand 2
B
109 113anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
183 187first strand
Strand 2
B
272 277anti-parallel
Strand 3
B
204 209anti-parallel
Strand 4
B
255 259anti-parallel
Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il