Analysis of interatomic Contacts of Structural Units in PDB entry:
6GFW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6GFW entry

There are 9 chains in PDB entry 6GFW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 5	VAL 237
B	SER 4	ARG 238
C	MET 1	ASP 1341
D	LEU 4	GLY 1376
E	ALA 2	GLN 75
F	T -20	C 29
G	G -29	A 20
M	TYR 104	ARG 473
R	U -1	G 2

There are119 helices in PDB entry 6GFW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	34	50	Right-handed alpha
Helix 2	AA2	A	77	87	Right-handed alpha
Helix 3	AA3	A	113	115	Right-handed 310
Helix 4	AA4	A	154	158	Right-handed 310
Helix 5	AA5	A	160	164	Right-handed 310
Helix 6	AA6	A	212	227	Right-handed alpha
Helix 7	AA7	A	228	231	Right-handed 310
Helix 8	AA8	B	34	50	Right-handed alpha
Helix 9	AA9	B	77	85	Right-handed alpha
Helix 10	AB1	B	111	115	Right-handed 310
Helix 11	AB2	B	166	171	Right-handed alpha
Helix 12	AB3	B	212	228	Right-handed alpha
Helix 13	AB4	B	230	235	Right-handed alpha
Helix 14	AB5	C	28	39	Right-handed alpha
Helix 15	AB6	C	48	57	Right-handed alpha
Helix 16	AB7	C	81	88	Right-handed alpha
Helix 17	AB8	C	206	212	Right-handed alpha
Helix 18	AB9	C	216	225	Right-handed alpha
Helix 19	AC1	C	270	280	Right-handed alpha
Helix 20	AC2	C	320	329	Right-handed alpha
Helix 21	AC3	C	347	354	Right-handed alpha
Helix 22	AC4	C	358	371	Right-handed alpha
Helix 23	AC5	C	378	389	Right-handed alpha
Helix 24	AC6	C	397	409	Right-handed alpha
Helix 25	AC7	C	421	437	Right-handed alpha
Helix 26	AC8	C	447	449	Right-handed 310
Helix 27	AC9	C	455	479	Right-handed alpha
Helix 28	AD1	C	495	508	Right-handed alpha
Helix 29	AD2	C	519	528	Right-handed alpha
Helix 30	AD3	C	551	555	Right-handed 310
Helix 31	AD4	C	607	614	Right-handed alpha
Helix 32	AD5	C	656	661	Right-handed 310
Helix 33	AD6	C	664	668	Right-handed 310
Helix 34	AD7	C	670	674	Right-handed 310
Helix 35	AD8	C	675	686	Right-handed alpha
Helix 36	AD9	C	687	689	Right-handed 310
Helix 37	AE1	C	704	712	Right-handed alpha
Helix 38	AE2	C	820	825	Right-handed alpha
Helix 39	AE3	C	858	863	Right-handed alpha
Helix 40	AE4	C	896	906	Right-handed alpha
Helix 41	AE5	C	944	982	Right-handed alpha
Helix 42	AE6	C	986	992	Right-handed alpha
Helix 43	AE7	C	992	1000	Right-handed alpha
Helix 44	AE8	C	1003	1009	Right-handed alpha
Helix 45	AE9	C	1009	1037	Right-handed alpha
Helix 46	AF1	C	1081	1085	Right-handed 310
Helix 47	AF2	C	1101	1107	Right-handed alpha
Helix 48	AF3	C	1109	1134	Right-handed alpha
Helix 49	AF4	C	1137	1150	Right-handed alpha
Helix 50	AF5	C	1168	1177	Right-handed alpha
Helix 51	AF6	C	1191	1201	Right-handed alpha
Helix 52	AF7	C	1271	1282	Right-handed alpha
Helix 53	AF8	C	1283	1292	Right-handed alpha
Helix 54	AF9	C	1297	1310	Right-handed alpha
Helix 55	AG1	C	1320	1333	Right-handed alpha
Helix 56	AG2	D	26	34	Right-handed alpha
Helix 57	AG3	D	70	74	Right-handed 310
Helix 58	AG4	D	95	99	Right-handed 310
Helix 59	AG5	D	131	139	Right-handed alpha
Helix 60	AG6	D	161	172	Right-handed alpha
Helix 61	AG7	D	182	191	Right-handed alpha
Helix 62	AG8	D	193	208	Right-handed alpha
Helix 63	AG9	D	212	231	Right-handed alpha
Helix 64	AH1	D	233	238	Right-handed 310
Helix 65	AH2	D	265	284	Right-handed alpha
Helix 66	AH3	D	288	308	Right-handed alpha
Helix 67	AH4	D	377	388	Right-handed alpha
Helix 68	AH5	D	393	403	Right-handed alpha
Helix 69	AH6	D	405	417	Right-handed alpha
Helix 70	AH7	D	430	432	Right-handed 310
Helix 71	AH8	D	450	458	Right-handed alpha
Helix 72	AH9	D	474	482	Right-handed alpha
Helix 73	AI1	D	504	514	Right-handed alpha
Helix 74	AI2	D	573	580	Right-handed alpha
Helix 75	AI3	D	588	592	Right-handed 310
Helix 76	AI4	D	598	613	Right-handed alpha
Helix 77	AI5	D	613	636	Right-handed alpha
Helix 78	AI6	D	649	670	Right-handed alpha
Helix 79	AI7	D	674	704	Right-handed alpha
Helix 80	AI8	D	720	729	Right-handed alpha
Helix 81	AI9	D	733	741	Right-handed alpha
Helix 82	AJ1	D	768	787	Right-handed alpha
Helix 83	AJ2	D	788	804	Right-handed alpha
Helix 84	AJ3	D	805	807	Right-handed 310
Helix 85	AJ4	D	834	840	Right-handed alpha
Helix 86	AJ5	D	865	874	Right-handed alpha
Helix 87	AJ6	D	914	916	Right-handed 310
Helix 88	AJ7	D	917	925	Right-handed alpha
Helix 89	AJ8	D	1140	1146	Right-handed alpha
Helix 90	AJ9	D	1216	1224	Right-handed alpha
Helix 91	AK1	D	1225	1242	Right-handed alpha
Helix 92	AK2	D	1249	1261	Right-handed alpha
Helix 93	AK3	D	1279	1293	Right-handed alpha
Helix 94	AK4	D	1312	1316	Right-handed 310
Helix 95	AK5	D	1327	1339	Right-handed alpha
Helix 96	AK6	D	1346	1354	Right-handed alpha
Helix 97	AK7	D	1360	1374	Right-handed alpha
Helix 98	AK8	E	6	13	Right-handed alpha
Helix 99	AK9	E	17	33	Right-handed alpha
Helix 100	AL1	E	45	57	Right-handed alpha
Helix 101	AL2	E	60	75	Right-handed alpha
Helix 102	AL3	M	123	130	Right-handed alpha
Helix 103	AL4	M	135	147	Right-handed alpha
Helix 104	AL5	M	157	166	Right-handed alpha
Helix 105	AL6	M	171	186	Right-handed alpha
Helix 106	AL7	M	195	203	Right-handed alpha
Helix 107	AL8	M	213	223	Right-handed alpha
Helix 108	AL9	M	224	231	Right-handed alpha
Helix 109	AM1	M	234	239	Right-handed alpha
Helix 110	AM2	M	242	245	Right-handed 310
Helix 111	AM3	M	246	255	Right-handed alpha
Helix 112	AM4	M	296	310	Right-handed alpha
Helix 113	AM5	M	321	355	Right-handed alpha
Helix 114	AM6	M	366	375	Right-handed alpha
Helix 115	AM7	M	377	385	Right-handed alpha
Helix 116	AM8	M	400	404	Right-handed 310
Helix 117	AM9	M	417	430	Right-handed alpha
Helix 118	AN1	M	439	448	Right-handed alpha
Helix 119	AN2	M	457	464	Right-handed alpha

There are 40 sheets in PDB entry 6GFW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	14	17	first strand
Strand 2	A	25	28	anti-parallel
Strand 3	A	199	206	anti-parallel
Strand 4	A	182	189	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	99	105	first strand
Strand 2	A	139	149	anti-parallel
Strand 3	A	53	60	anti-parallel
Strand 4	A	170	172	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	110	111	first strand
Strand 2	A	129	130	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	15	19	first strand
Strand 2	B	23	31	anti-parallel
Strand 3	B	195	206	anti-parallel
Strand 4	B	182	192	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	52	61	first strand
Strand 2	B	140	150	anti-parallel
Strand 3	B	97	104	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	90	92	first strand
Strand 2	B	121	123	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	152	153	first strand
Strand 2	B	175	176	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	13	14	first strand
Strand 2	C	1182	1183	parallel
Strand 3	C	700	701	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	59	60	first strand
Strand 2	C	66	75	anti-parallel
Strand 3	C	93	105	anti-parallel
Strand 4	C	113	117	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	59	60	first strand
Strand 2	C	66	75	anti-parallel
Strand 3	C	93	105	anti-parallel
Strand 4	C	126	128	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	144	145	first strand
Strand 2	C	512	513	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	451	454	first strand
Strand 2	C	147	151	anti-parallel
Strand 3	C	530	531	parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	154	158	first strand
Strand 2	C	173	177	anti-parallel
Strand 3	C	184	188	anti-parallel
Strand 4	C	194	198	anti-parallel
Strand 5	C	204	205	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	227	228	first strand
Strand 2	C	335	336	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	230	231	first strand
Strand 2	C	238	239	anti-parallel
Strand 3	C	285	286	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	255	257	first strand
Strand 2	C	260	263	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	580	581	first strand
Strand 2	C	587	595	anti-parallel
Strand 3	C	598	606	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	580	581	first strand
Strand 2	C	587	595	anti-parallel
Strand 3	C	652	653	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	616	617	first strand
Strand 2	C	634	637	anti-parallel
Strand 3	C	643	645	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	716	718	first strand
Strand 2	C	781	785	anti-parallel
Strand 3	C	768	769	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	722	727	first strand
Strand 2	C	731	736	anti-parallel
Strand 3	C	749	752	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	757	758	first strand
Strand 2	C	764	765	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	789	790	first strand
Strand 2	C	793	794	anti-parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1066	1067	first strand
Strand 2	C	1225	1234	anti-parallel
Strand 3	C	798	804	anti-parallel
Strand 4	C	1096	1098	parallel
Strand 5	C	816	819	anti-parallel
Strand 6	C	1076	1080	parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1066	1067	first strand
Strand 2	C	1225	1234	anti-parallel
Strand 3	C	1209	1210	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	829	841	first strand
Strand 2	C	1046	1059	anti-parallel
Strand 3	C	925	931	anti-parallel
Strand 4	C	876	878	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	865	866	first strand
Strand 2	C	870	871	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	888	889	first strand
Strand 2	C	913	914	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1335	1338	first strand
Strand 2	D	21	24	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	104	106	first strand
Strand 2	D	241	243	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	146	147	first strand
Strand 2	D	177	178	anti-parallel

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There are 7 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	353	356	first strand
Strand 2	D	447	448	parallel
Strand 3	D	365	369	anti-parallel
Strand 4	D	434	442	parallel
Strand 5	D	421	424	anti-parallel
Strand 6	D	465	469	anti-parallel
Strand 7	D	353	356	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	526	528	first strand
Strand 2	D	549	556	parallel
Strand 3	D	564	571	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	820	822	first strand
Strand 2	D	880	883	anti-parallel
Strand 3	D	843	844	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	959	961	first strand
Strand 2	D	981	983	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	966	967	first strand
Strand 2	D	973	974	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1002	1003	first strand
Strand 2	D	1018	1019	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1059	1060	first strand
Strand 2	D	1106	1107	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1174	1177	first strand
Strand 2	D	1188	1190	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1264	1266	first strand
Strand 2	D	1302	1304	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6GFW

Analysis of interatomic Contacts of Structural Units in PDB entry:
6GFW