Analysis of interatomic Contacts of Structural Units in PDB entry:
6GHM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6GHM entry

There are 4 chains in PDB entry 6GHM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 7ASN 324
B
 LEU 7ASN 324
C
 MET 920LYS 1121
D
 MET 920PRO 1122
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 6GHM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 18Right-handed alpha
Helix 2
AA2
A
31 49Right-handed alpha
Helix 3
AA3
A
68 80Right-handed alpha
Helix 4
AA4
A
99 114Right-handed alpha
Helix 5
AA5
A
135 144Right-handed alpha
Helix 6
AA6
A
145 157Right-handed alpha
Helix 7
AA7
A
182 188Right-handed alpha
Helix 8
AA8
A
199 207Right-handed alpha
Helix 9
AA9
A
228 240Right-handed alpha
Helix 10
AB1
A
271 275Right-handed 310
Helix 11
AB2
B
8 18Right-handed alpha
Helix 12
AB3
B
31 49Right-handed alpha
Helix 13
AB4
B
68 80Right-handed alpha
Helix 14
AB5
B
99 114Right-handed alpha
Helix 15
AB6
B
127 132Right-handed alpha
Helix 16
AB7
B
135 144Right-handed alpha
Helix 17
AB8
B
145 157Right-handed alpha
Helix 18
AB9
B
182 188Right-handed alpha
Helix 19
AC1
B
199 207Right-handed alpha
Helix 20
AC2
B
228 239Right-handed alpha
Helix 21
AC3
B
271 275Right-handed 310
Helix 22
AC4
C
925 937Right-handed alpha
Helix 23
AC5
C
938 946Right-handed alpha
Helix 24
AC6
C
961 969Right-handed alpha
Helix 25
AC7
C
971 982Right-handed alpha
Helix 26
AC8
C
994 1002Right-handed alpha
Helix 27
AC9
C
1004 1013Right-handed alpha
Helix 28
AD1
C
1029 1033Right-handed 310
Helix 29
AD2
C
1039 1054Right-handed alpha
Helix 30
AD3
C
1056 1060Right-handed alpha
Helix 31
AD4
D
925 937Right-handed alpha
Helix 32
AD5
D
938 946Right-handed alpha
Helix 33
AD6
D
947 949Right-handed 310
Helix 34
AD7
D
961 969Right-handed alpha
Helix 35
AD8
D
971 982Right-handed alpha
Helix 36
AD9
D
994 1002Right-handed alpha
Helix 37
AE1
D
1004 1013Right-handed alpha
Helix 38
AE2
D
1029 1033Right-handed 310
Helix 39
AE3
D
1039 1054Right-handed alpha
Helix 40
AE4
D
1057 1059Right-handed 310
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There are 8 sheets in PDB entry 6GHM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 55first strand
Strand 2
A
162 165parallel
Strand 3
A
169 172anti-parallel
Strand 4
A
243 246parallel
Strand 5
A
263 266parallel
Strand 6
A
255 258anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
118 120first strand
Strand 2
A
87 89parallel
Strand 3
A
59 62parallel
Strand 4
A
280 285anti-parallel
Strand 5
A
290 296anti-parallel
Strand 6
D
923 924parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
208 209first strand
Strand 2
A
225 227parallel
Strand 3
A
216 218anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
52 55first strand
Strand 2
B
162 165parallel
Strand 3
B
169 171anti-parallel
Strand 4
B
243 246parallel
Strand 5
B
263 266parallel
Strand 6
B
255 258anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
118 120first strand
Strand 2
B
87 89parallel
Strand 3
B
59 62parallel
Strand 4
B
280 285anti-parallel
Strand 5
B
290 296anti-parallel
Strand 6
C
923 924parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
208 209first strand
Strand 2
B
225 227parallel
Strand 3
B
216 218anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1105 1110first strand
Strand 2
C
1097 1102anti-parallel
Strand 3
C
1083 1088anti-parallel
Strand 4
C
1061 1064anti-parallel
Strand 5
C
1114 1115anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
1105 1110first strand
Strand 2
D
1097 1102anti-parallel
Strand 3
D
1083 1089anti-parallel
Strand 4
D
1061 1064anti-parallel
Strand 5
D
1114 1115anti-parallel
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