Analysis of interatomic Contacts of Structural Units in PDB entry:
6GI7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6GI7 entry

There is 1 chain in PDB entry 6GI7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 3LEU 364
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 6GI7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
38 48Right-handed alpha
Helix 2
AA2
A
76 93Right-handed alpha
Helix 3
AA3
A
109 117Right-handed 310
Helix 4
AA4
A
152 154Right-handed 310
Helix 5
AA5
A
155 173Right-handed alpha
Helix 6
AA6
A
186 193Right-handed alpha
Helix 7
AA7
A
206 211Right-handed alpha
Helix 8
AA8
A
211 225Right-handed alpha
Helix 9
AA9
A
226 228Right-handed 310
Helix 10
AB1
A
248 263Right-handed alpha
Helix 11
AB2
A
282 293Right-handed alpha
Helix 12
AB3
A
304 314Right-handed alpha
Helix 13
AB4
A
323 329Right-handed alpha
Helix 14
AB5
A
331 339Right-handed alpha
Helix 15
AB6
A
346 350Right-handed 310
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There are 4 sheets in PDB entry 6GI7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 11first strand
Strand 2
A
14 16anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 22first strand
Strand 2
A
54 60parallel
Strand 3
A
97 102parallel
Strand 4
A
177 182parallel
Strand 5
A
230 234parallel
Strand 6
A
267 271parallel
Strand 7
A
296 300parallel
Strand 8
A
319 322parallel
Strand 9
A
20 22parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
120 121first strand
Strand 2
A
149 150parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
130 134first strand
Strand 2
A
140 144anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il