Analysis of interatomic Contacts of Structural Units in PDB entry:
6GL7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6GL7 entry

There are 6 chains in PDB entry 6GL7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
LEU 98VAL 197
D
ASP 39THR 359
A
LEU 98VAL 197
C
ASP 39THR 359
F
LEU 29GLU 505
E
LEU 29GLU 505
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 54 helices in PDB entry 6GL7. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
B
113 116Right-handed 310
Helix 2
AA2
B
139 151Right-handed alpha
Helix 3
AA3
D
40 49Right-handed alpha
Helix 4
AA4
D
50 63Right-handed alpha
Helix 5
AA5
D
74 86Right-handed alpha
Helix 6
AA6
D
103 111Right-handed alpha
Helix 7
AA7
D
132 147Right-handed alpha
Helix 8
AA8
D
159 170Right-handed alpha
Helix 9
AA9
D
171 186Right-handed alpha
Helix 10
AB1
D
196 211Right-handed alpha
Helix 11
AB2
D
212 221Right-handed alpha
Helix 12
AB3
D
226 235Right-handed alpha
Helix 13
AB4
D
238 243Right-handed alpha
Helix 14
AB5
D
250 261Right-handed alpha
Helix 15
AB6
D
261 276Right-handed alpha
Helix 16
AB7
D
285 288Right-handed 310
Helix 17
AB8
D
289 300Right-handed alpha
Helix 18
AB9
D
328 330Right-handed 310
Helix 19
AC1
D
331 344Right-handed alpha
Helix 20
AC2
D
345 357Right-handed alpha
Helix 21
AC3
A
113 116Right-handed 310
Helix 22
AC4
A
139 151Right-handed alpha
Helix 23
AC5
C
40 49Right-handed alpha
Helix 24
AC6
C
50 63Right-handed alpha
Helix 25
AC7
C
74 86Right-handed alpha
Helix 26
AC8
C
103 111Right-handed alpha
Helix 27
AC9
C
132 147Right-handed alpha
Helix 28
AD1
C
159 170Right-handed alpha
Helix 29
AD2
C
171 186Right-handed alpha
Helix 30
AD3
C
196 211Right-handed alpha
Helix 31
AD4
C
212 221Right-handed alpha
Helix 32
AD5
C
226 235Right-handed alpha
Helix 33
AD6
C
238 243Right-handed alpha
Helix 34
AD7
C
250 259Right-handed alpha
Helix 35
AD8
C
261 275Right-handed alpha
Helix 36
AD9
C
285 288Right-handed 310
Helix 37
AE1
C
289 299Right-handed alpha
Helix 38
AE2
C
328 330Right-handed 310
Helix 39
AE3
C
331 344Right-handed alpha
Helix 40
AE4
C
345 357Right-handed alpha
Helix 41
AE5
F
102 112Right-handed alpha
Helix 42
AE6
F
156 160Right-handed 310
Helix 43
AE7
F
161 167Right-handed alpha
Helix 44
AE8
F
190 197Right-handed alpha
Helix 45
AE9
F
306 312Right-handed alpha
Helix 46
AF1
F
428 433Right-handed alpha
Helix 47
AF2
F
474 478Right-handed 310
Helix 48
AF3
E
102 112Right-handed alpha
Helix 49
AF4
E
156 160Right-handed 310
Helix 50
AF5
E
161 167Right-handed alpha
Helix 51
AF6
E
190 197Right-handed alpha
Helix 52
AF7
E
306 312Right-handed alpha
Helix 53
AF8
E
428 433Right-handed alpha
Helix 54
AF9
E
474 478Right-handed 310
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There are 30 sheets in PDB entry 6GL7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
104 111first strand
Strand 2
B
124 131anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
165 170first strand
Strand 2
B
191 196anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
174 177first strand
Strand 2
B
183 186anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
308 309first strand
Strand 2
D
319 320anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
104 111first strand
Strand 2
A
124 131anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
165 170first strand
Strand 2
A
191 196anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
174 177first strand
Strand 2
A
183 186anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
308 309first strand
Strand 2
C
319 320anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
30 31first strand
Strand 2
F
55 56anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
35 40first strand
Strand 2
F
142 149parallel
Strand 3
F
120 126anti-parallel
Strand 4
F
67 68anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
49 52first strand
Strand 2
F
94 97anti-parallel
Strand 3
F
86 88anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
71 74first strand
Strand 2
F
78 82anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
174 176first strand
Strand 2
F
252 262parallel
Strand 3
F
236 245anti-parallel
Strand 4
F
202 207anti-parallel
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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
184 187first strand
Strand 2
F
222 225anti-parallel
Strand 3
F
214 215anti-parallel
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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
282 283first strand
Strand 2
F
376 377parallel
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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
291 295first strand
Strand 2
F
339 342anti-parallel
Strand 3
F
329 332anti-parallel
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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
352 357first strand
Strand 2
F
369 374anti-parallel
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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
419 424first strand
Strand 2
F
464 468anti-parallel
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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
441 443first strand
Strand 2
F
480 489anti-parallel
Strand 3
F
492 503anti-parallel
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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
30 31first strand
Strand 2
E
55 56anti-parallel
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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
35 40first strand
Strand 2
E
142 149parallel
Strand 3
E
120 126anti-parallel
Strand 4
E
67 68anti-parallel
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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
49 52first strand
Strand 2
E
94 97anti-parallel
Strand 3
E
86 88anti-parallel
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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
71 74first strand
Strand 2
E
78 82anti-parallel
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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
174 176first strand
Strand 2
E
252 262parallel
Strand 3
E
236 245anti-parallel
Strand 4
E
202 207anti-parallel
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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
184 187first strand
Strand 2
E
222 225anti-parallel
Strand 3
E
214 215anti-parallel
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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
282 283first strand
Strand 2
E
376 377parallel
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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
291 295first strand
Strand 2
E
339 342anti-parallel
Strand 3
E
329 332anti-parallel
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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
352 357first strand
Strand 2
E
369 374anti-parallel
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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
419 424first strand
Strand 2
E
464 468anti-parallel
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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
441 443first strand
Strand 2
E
480 489anti-parallel
Strand 3
E
492 503anti-parallel
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