Analysis of interatomic Contacts of Structural Units in PDB entry:
6GR8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6GR8 entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 5 chains in PDB entry 6GR8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 32LEU 38
A
 VAL 40LYS 197
A
 MET 199PRO 303
B
 PRO 838THR 892
B
 ALA 895GLN 903
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 6GR8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
39 41Right-handed 310
Helix 2
AA2
A
76 83Right-handed alpha
Helix 3
AA3
A
84 98Right-handed alpha
Helix 4
AA4
A
128 136Right-handed alpha
Helix 5
AA5
A
139 160Right-handed alpha
Helix 6
AA6
A
168 170Right-handed 310
Helix 7
AA7
A
202 206Right-handed 310
Helix 8
AA8
A
207 212Right-handed alpha
Helix 9
AA9
A
219 235Right-handed alpha
Helix 10
AB1
A
243 253Right-handed alpha
Helix 11
AB2
A
263 274Right-handed alpha
Helix 12
AB3
A
277 281Right-handed 310
Helix 13
AB4
A
283 290Right-handed alpha
Helix 14
AB5
A
290 297Right-handed alpha
Helix 15
AB6
B
843 846Right-handed 310
Helix 16
AB7
B
847 861Right-handed alpha
Helix 17
AB8
B
864 870Right-handed alpha
Helix 18
AB9
B
876 882Right-handed alpha
Helix 19
AC1
B
885 890Right-handed alpha
Helix 20
AC2
B
892 896Right-handed 310
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There are 3 sheets in PDB entry 6GR8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 52first strand
Strand 2
A
55 62anti-parallel
Strand 3
A
68 75anti-parallel
Strand 4
A
115 120anti-parallel
Strand 5
A
106 111anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
126 127first strand
Strand 2
A
172 174anti-parallel
Strand 3
A
180 182anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
162 163first strand
Strand 2
A
189 190anti-parallel
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