Analysis of interatomic Contacts of Structural Units in PDB entry:
6GYS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6GYS entry

There are 12 chains in PDB entry 6GYS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 3	ILE 478
B	MET 1	SER 608
C	THR 6	SER 608
D	SER 4	GLU 192
E	GLU 27	PRO 538
F	T 5	A 56
G	T 1	A 52
H	SER 3	ILE 478
I	MET 1	SER 608
J	HIS 12	SER 608
K	SER 4	GLU 192
L	GLU 27	PRO 538

There are216 helices in PDB entry 6GYS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	5	12	Right-handed alpha
Helix 2	AA2	A	13	23	Right-handed alpha
Helix 3	AA3	A	57	66	Right-handed alpha
Helix 4	AA4	A	66	71	Right-handed alpha
Helix 5	AA5	A	73	78	Right-handed 310
Helix 6	AA6	A	80	92	Right-handed alpha
Helix 7	AA7	A	93	96	Right-handed 310
Helix 8	AA8	A	97	110	Right-handed alpha
Helix 9	AA9	A	143	150	Right-handed alpha
Helix 10	AB1	A	159	164	Right-handed alpha
Helix 11	AB2	A	176	189	Right-handed alpha
Helix 12	AB3	A	257	267	Right-handed alpha
Helix 13	AB4	A	268	270	Right-handed 310
Helix 14	AB5	A	280	288	Right-handed alpha
Helix 15	AB6	A	302	309	Right-handed alpha
Helix 16	AB7	A	371	377	Right-handed alpha
Helix 17	AB8	A	383	390	Right-handed alpha
Helix 18	AB9	A	423	435	Right-handed alpha
Helix 19	AC1	A	456	460	Right-handed alpha
Helix 20	AC2	B	14	21	Right-handed alpha
Helix 21	AC3	B	33	37	Right-handed 310
Helix 22	AC4	B	38	44	Right-handed alpha
Helix 23	AC5	B	57	74	Right-handed alpha
Helix 24	AC6	B	95	106	Right-handed alpha
Helix 25	AC7	B	107	122	Right-handed alpha
Helix 26	AC8	B	125	130	Right-handed alpha
Helix 27	AC9	B	132	146	Right-handed alpha
Helix 28	AD1	B	147	149	Right-handed 310
Helix 29	AD2	B	153	174	Right-handed alpha
Helix 30	AD3	B	175	181	Right-handed alpha
Helix 31	AD4	B	185	193	Right-handed alpha
Helix 32	AD5	B	199	202	Right-handed 310
Helix 33	AD6	B	203	224	Right-handed alpha
Helix 34	AD7	B	230	242	Right-handed alpha
Helix 35	AD8	B	244	249	Right-handed alpha
Helix 36	AD9	B	249	266	Right-handed alpha
Helix 37	AE1	B	279	303	Right-handed alpha
Helix 38	AE2	B	342	357	Right-handed alpha
Helix 39	AE3	B	366	386	Right-handed alpha
Helix 40	AE4	B	393	422	Right-handed alpha
Helix 41	AE5	B	426	446	Right-handed alpha
Helix 42	AE6	B	451	455	Right-handed 310
Helix 43	AE7	B	456	477	Right-handed alpha
Helix 44	AE8	B	479	495	Right-handed alpha
Helix 45	AE9	B	501	524	Right-handed alpha
Helix 46	AF1	B	535	553	Right-handed alpha
Helix 47	AF2	B	554	561	Right-handed alpha
Helix 48	AF3	B	589	601	Right-handed alpha
Helix 49	AF4	B	602	607	Right-handed 310
Helix 50	AF5	C	14	21	Right-handed alpha
Helix 51	AF6	C	32	37	Right-handed alpha
Helix 52	AF7	C	38	44	Right-handed alpha
Helix 53	AF8	C	56	70	Right-handed alpha
Helix 54	AF9	C	96	106	Right-handed alpha
Helix 55	AG1	C	107	122	Right-handed alpha
Helix 56	AG2	C	122	128	Right-handed alpha
Helix 57	AG3	C	132	149	Right-handed alpha
Helix 58	AG4	C	153	174	Right-handed alpha
Helix 59	AG5	C	175	183	Right-handed alpha
Helix 60	AG6	C	184	192	Right-handed alpha
Helix 61	AG7	C	203	224	Right-handed alpha
Helix 62	AG8	C	231	241	Right-handed alpha
Helix 63	AG9	C	244	249	Right-handed alpha
Helix 64	AH1	C	249	265	Right-handed alpha
Helix 65	AH2	C	279	303	Right-handed alpha
Helix 66	AH3	C	319	327	Right-handed alpha
Helix 67	AH4	C	340	356	Right-handed alpha
Helix 68	AH5	C	368	387	Right-handed alpha
Helix 69	AH6	C	393	423	Right-handed alpha
Helix 70	AH7	C	426	445	Right-handed alpha
Helix 71	AH8	C	450	455	Right-handed 310
Helix 72	AH9	C	456	477	Right-handed alpha
Helix 73	AI1	C	479	495	Right-handed alpha
Helix 74	AI2	C	501	524	Right-handed alpha
Helix 75	AI3	C	535	553	Right-handed alpha
Helix 76	AI4	C	554	563	Right-handed alpha
Helix 77	AI5	C	589	601	Right-handed alpha
Helix 78	AI6	D	21	25	Right-handed 310
Helix 79	AI7	D	26	33	Right-handed alpha
Helix 80	AI8	D	83	98	Right-handed alpha
Helix 81	AI9	D	117	124	Right-handed alpha
Helix 82	AJ1	D	127	142	Right-handed alpha
Helix 83	AJ2	D	143	159	Right-handed alpha
Helix 84	AJ3	D	162	169	Right-handed alpha
Helix 85	AJ4	D	177	189	Right-handed alpha
Helix 86	AJ5	E	30	35	Right-handed alpha
Helix 87	AJ6	E	38	59	Right-handed alpha
Helix 88	AJ7	E	81	93	Right-handed alpha
Helix 89	AJ8	E	98	102	Right-handed 310
Helix 90	AJ9	E	107	139	Right-handed alpha
Helix 91	AK1	E	147	168	Right-handed alpha
Helix 92	AK2	E	183	192	Right-handed alpha
Helix 93	AK3	E	207	224	Right-handed alpha
Helix 94	AK4	E	227	233	Right-handed alpha
Helix 95	AK5	E	235	239	Right-handed 310
Helix 96	AK6	E	281	295	Right-handed alpha
Helix 97	AK7	E	334	349	Right-handed alpha
Helix 98	AK8	E	355	360	Right-handed alpha
Helix 99	AK9	E	371	378	Right-handed alpha
Helix 100	AL1	E	380	384	Right-handed 310
Helix 101	AL2	E	400	406	Right-handed alpha
Helix 102	AL3	E	418	422	Right-handed 310
Helix 103	AL4	E	428	433	Right-handed alpha
Helix 104	AL5	E	436	443	Right-handed alpha
Helix 105	AL6	E	451	479	Right-handed alpha
Helix 106	AL7	E	482	486	Right-handed 310
Helix 107	AL8	E	492	503	Right-handed alpha
Helix 108	AL9	E	520	525	Right-handed alpha
Helix 109	AM1	E	526	534	Right-handed alpha
Helix 110	AM2	H	5	12	Right-handed alpha
Helix 111	AM3	H	13	24	Right-handed alpha
Helix 112	AM4	H	57	66	Right-handed alpha
Helix 113	AM5	H	67	70	Right-handed 310
Helix 114	AM6	H	73	78	Right-handed 310
Helix 115	AM7	H	80	94	Right-handed alpha
Helix 116	AM8	H	97	111	Right-handed alpha
Helix 117	AM9	H	143	151	Right-handed alpha
Helix 118	AN1	H	159	164	Right-handed alpha
Helix 119	AN2	H	176	190	Right-handed alpha
Helix 120	AN3	H	257	268	Right-handed alpha
Helix 121	AN4	H	269	271	Right-handed 310
Helix 122	AN5	H	280	288	Right-handed alpha
Helix 123	AN6	H	302	309	Right-handed alpha
Helix 124	AN7	H	346	350	Right-handed 310
Helix 125	AN8	H	371	380	Right-handed alpha
Helix 126	AN9	H	383	389	Right-handed alpha
Helix 127	AO1	H	423	433	Right-handed alpha
Helix 128	AO2	H	455	460	Right-handed alpha
Helix 129	AO3	H	461	463	Right-handed 310
Helix 130	AO4	I	14	21	Right-handed alpha
Helix 131	AO5	I	30	36	Right-handed alpha
Helix 132	AO6	I	38	44	Right-handed alpha
Helix 133	AO7	I	56	72	Right-handed alpha
Helix 134	AO8	I	74	79	Right-handed alpha
Helix 135	AO9	I	98	106	Right-handed alpha
Helix 136	AP1	I	107	122	Right-handed alpha
Helix 137	AP2	I	124	130	Right-handed alpha
Helix 138	AP3	I	133	144	Right-handed alpha
Helix 139	AP4	I	153	174	Right-handed alpha
Helix 140	AP5	I	175	183	Right-handed alpha
Helix 141	AP6	I	185	193	Right-handed alpha
Helix 142	AP7	I	199	202	Right-handed 310
Helix 143	AP8	I	203	224	Right-handed alpha
Helix 144	AP9	I	230	242	Right-handed alpha
Helix 145	AQ1	I	244	249	Right-handed alpha
Helix 146	AQ2	I	249	268	Right-handed alpha
Helix 147	AQ3	I	279	303	Right-handed alpha
Helix 148	AQ4	I	342	356	Right-handed alpha
Helix 149	AQ5	I	366	382	Right-handed alpha
Helix 150	AQ6	I	393	422	Right-handed alpha
Helix 151	AQ7	I	426	445	Right-handed alpha
Helix 152	AQ8	I	450	454	Right-handed 310
Helix 153	AQ9	I	456	477	Right-handed alpha
Helix 154	AR1	I	479	495	Right-handed alpha
Helix 155	AR2	I	501	524	Right-handed alpha
Helix 156	AR3	I	535	553	Right-handed alpha
Helix 157	AR4	I	555	560	Right-handed alpha
Helix 158	AR5	I	589	593	Right-handed alpha
Helix 159	AR6	I	593	601	Right-handed alpha
Helix 160	AR7	I	602	607	Right-handed 310
Helix 161	AR8	J	14	20	Right-handed alpha
Helix 162	AR9	J	56	61	Right-handed alpha
Helix 163	AS1	J	62	72	Right-handed alpha
Helix 164	AS2	J	96	106	Right-handed alpha
Helix 165	AS3	J	107	122	Right-handed alpha
Helix 166	AS4	J	122	130	Right-handed alpha
Helix 167	AS5	J	132	144	Right-handed alpha
Helix 168	AS6	J	153	173	Right-handed alpha
Helix 169	AS7	J	175	183	Right-handed alpha
Helix 170	AS8	J	188	193	Right-handed alpha
Helix 171	AS9	J	204	224	Right-handed alpha
Helix 172	AT1	J	230	241	Right-handed alpha
Helix 173	AT2	J	244	249	Right-handed alpha
Helix 174	AT3	J	249	267	Right-handed alpha
Helix 175	AT4	J	279	303	Right-handed alpha
Helix 176	AT5	J	342	354	Right-handed alpha
Helix 177	AT6	J	366	383	Right-handed alpha
Helix 178	AT7	J	393	420	Right-handed alpha
Helix 179	AT8	J	427	444	Right-handed alpha
Helix 180	AT9	J	450	455	Right-handed 310
Helix 181	AU1	J	456	477	Right-handed alpha
Helix 182	AU2	J	479	496	Right-handed alpha
Helix 183	AU3	J	497	500	Right-handed 310
Helix 184	AU4	J	501	524	Right-handed alpha
Helix 185	AU5	J	535	552	Right-handed alpha
Helix 186	AU6	J	554	562	Right-handed alpha
Helix 187	AU7	J	592	601	Right-handed alpha
Helix 188	AU8	J	602	607	Right-handed 310
Helix 189	AU9	K	20	24	Right-handed alpha
Helix 190	AV1	K	26	33	Right-handed alpha
Helix 191	AV2	K	83	97	Right-handed alpha
Helix 192	AV3	K	117	124	Right-handed alpha
Helix 193	AV4	K	127	141	Right-handed alpha
Helix 194	AV5	K	143	159	Right-handed alpha
Helix 195	AV6	K	162	169	Right-handed alpha
Helix 196	AV7	K	177	188	Right-handed alpha
Helix 197	AV8	L	29	35	Right-handed alpha
Helix 198	AV9	L	38	59	Right-handed alpha
Helix 199	AW1	L	81	93	Right-handed alpha
Helix 200	AW2	L	109	139	Right-handed alpha
Helix 201	AW3	L	147	169	Right-handed alpha
Helix 202	AW4	L	183	191	Right-handed alpha
Helix 203	AW5	L	207	224	Right-handed alpha
Helix 204	AW6	L	227	232	Right-handed alpha
Helix 205	AW7	L	281	295	Right-handed alpha
Helix 206	AW8	L	334	349	Right-handed alpha
Helix 207	AW9	L	355	359	Right-handed 310
Helix 208	AX1	L	400	408	Right-handed alpha
Helix 209	AX2	L	418	422	Right-handed 310
Helix 210	AX3	L	428	435	Right-handed alpha
Helix 211	AX4	L	437	445	Right-handed alpha
Helix 212	AX5	L	451	479	Right-handed alpha
Helix 213	AX6	L	487	491	Right-handed 310
Helix 214	AX7	L	492	503	Right-handed alpha
Helix 215	AX8	L	504	509	Right-handed 310
Helix 216	AX9	L	526	534	Right-handed alpha

There are 14 sheets in PDB entry 6GYS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	138	140	first strand
Strand 2	A	129	132	anti-parallel
Strand 3	A	118	120	anti-parallel
Strand 4	A	168	169	parallel
Strand 5	A	196	198	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	276	278	first strand
Strand 2	A	311	314	parallel
Strand 3	A	336	339	parallel
Strand 4	A	358	361	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	344	345	first strand
Strand 2	A	366	367	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	410	411	first strand
Strand 2	A	475	478	parallel
Strand 3	A	452	455	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	50	51	first strand
Strand 2	C	527	528	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	15	19	first strand
Strand 2	D	5	9	anti-parallel
Strand 3	D	75	78	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	253	254	first strand
Strand 2	E	267	268	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	45	46	first strand
Strand 2	L	72	73	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	118	120	first strand
Strand 2	H	129	132	anti-parallel
Strand 3	H	138	140	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	276	278	first strand
Strand 2	H	311	317	parallel
Strand 3	H	336	342	parallel
Strand 4	H	358	361	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	344	345	first strand
Strand 2	H	366	367	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	410	411	first strand
Strand 2	H	475	476	parallel
Strand 3	H	452	453	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	16	19	first strand
Strand 2	K	5	10	anti-parallel
Strand 3	K	78	79	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	240	241	first strand
Strand 2	L	249	252	anti-parallel
Strand 3	L	269	270	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6GYS

Analysis of interatomic Contacts of Structural Units in PDB entry:
6GYS