Analysis of interatomic Contacts of Structural Units in PDB entry:
6GYZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6GYZ entry

There are 2 chains in PDB entry 6GYZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 3LYS 451
B
 LYS 3ASP 450
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 6GYZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
19 36Right-handed alpha
Helix 2
AA2
A
53 68Right-handed alpha
Helix 3
AA3
A
80 91Right-handed alpha
Helix 4
AA4
A
122 135Right-handed alpha
Helix 5
AA5
A
144 148Right-handed 310
Helix 6
AA6
A
156 169Right-handed alpha
Helix 7
AA7
A
185 189Right-handed 310
Helix 8
AA8
A
190 198Right-handed alpha
Helix 9
AA9
A
223 234Right-handed alpha
Helix 10
AB1
A
259 274Right-handed alpha
Helix 11
AB2
A
277 279Right-handed 310
Helix 12
AB3
A
289 299Right-handed alpha
Helix 13
AB4
A
309 321Right-handed alpha
Helix 14
AB5
A
342 358Right-handed alpha
Helix 15
AB6
A
360 366Right-handed alpha
Helix 16
AB7
A
384 389Right-handed alpha
Helix 17
AB8
A
389 403Right-handed alpha
Helix 18
AB9
A
428 448Right-handed alpha
Helix 19
AC1
B
19 36Right-handed alpha
Helix 20
AC2
B
54 68Right-handed alpha
Helix 21
AC3
B
80 91Right-handed alpha
Helix 22
AC4
B
122 135Right-handed alpha
Helix 23
AC5
B
144 148Right-handed 310
Helix 24
AC6
B
156 169Right-handed alpha
Helix 25
AC7
B
185 189Right-handed 310
Helix 26
AC8
B
190 198Right-handed alpha
Helix 27
AC9
B
223 233Right-handed alpha
Helix 28
AD1
B
259 274Right-handed alpha
Helix 29
AD2
B
277 279Right-handed 310
Helix 30
AD3
B
289 299Right-handed alpha
Helix 31
AD4
B
309 321Right-handed alpha
Helix 32
AD5
B
342 358Right-handed alpha
Helix 33
AD6
B
360 366Right-handed alpha
Helix 34
AD7
B
389 403Right-handed alpha
Helix 35
AD8
B
428 447Right-handed alpha
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There are 8 sheets in PDB entry 6GYZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 6first strand
Strand 2
A
9 13anti-parallel
Strand 3
A
108 115anti-parallel
Strand 4
A
95 99anti-parallel
Strand 5
A
44 49parallel
Strand 6
A
72 78parallel
Strand 7
A
152 153parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
201 205first strand
Strand 2
A
177 181parallel
Strand 3
A
237 241parallel
Strand 4
A
248 251anti-parallel
Strand 5
A
257 258anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
302 306first strand
Strand 2
A
281 285parallel
Strand 3
A
324 326parallel
Strand 4
A
332 334anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
373 378first strand
Strand 2
A
420 426anti-parallel
Strand 3
A
407 413anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 13first strand
Strand 2
B
108 115anti-parallel
Strand 3
B
95 99anti-parallel
Strand 4
B
44 49parallel
Strand 5
B
72 78parallel
Strand 6
B
152 153parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
201 205first strand
Strand 2
B
177 181parallel
Strand 3
B
237 241parallel
Strand 4
B
248 251anti-parallel
Strand 5
B
257 258anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
302 306first strand
Strand 2
B
281 285parallel
Strand 3
B
324 326parallel
Strand 4
B
332 334anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
373 379first strand
Strand 2
B
419 426anti-parallel
Strand 3
B
407 413anti-parallel
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