Analysis of interatomic Contacts of Structural Units in PDB entry:
6GZH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6GZH entry


Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 3 chains in PDB entry 6GZH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 8TYR 185
A
 ASN 187GLY 326
B
 ASN 8ARG 259
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 27 helices in PDB entry 6GZH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 17Right-handed 310
Helix 2
AA2
A
60 73Right-handed alpha
Helix 3
AA3
A
110 115Right-handed alpha
Helix 4
AA4
A
122 143Right-handed alpha
Helix 5
AA5
A
191 195Right-handed 310
Helix 6
AA6
A
196 201Right-handed alpha
Helix 7
AA7
A
208 225Right-handed alpha
Helix 8
AA8
A
233 246Right-handed alpha
Helix 9
AA9
A
255 259Right-handed 310
Helix 10
AB1
A
260 265Right-handed alpha
Helix 11
AB2
A
274 280Right-handed alpha
Helix 12
AB3
A
285 296Right-handed alpha
Helix 13
AB4
A
305 311Right-handed alpha
Helix 14
AB5
B
15 21Right-handed alpha
Helix 15
AB6
B
22 28Right-handed alpha
Helix 16
AB7
B
32 53Right-handed alpha
Helix 17
AB8
B
55 70Right-handed alpha
Helix 18
AB9
B
79 95Right-handed alpha
Helix 19
AC1
B
100 113Right-handed alpha
Helix 20
AC2
B
123 145Right-handed alpha
Helix 21
AC3
B
153 162Right-handed alpha
Helix 22
AC4
B
167 185Right-handed alpha
Helix 23
AC5
B
186 190Right-handed 310
Helix 24
AC6
B
192 209Right-handed alpha
Helix 25
AC7
B
220 225Right-handed 310
Helix 26
AC8
B
230 248Right-handed alpha
Helix 27
AC9
B
250 255Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 6GZH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
19 26first strand
Strand 2
A
33 38anti-parallel
Strand 3
A
44 49anti-parallel
Strand 4
A
99 104anti-parallel
Strand 5
A
81 86anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
108 109first strand
Strand 2
A
155 157anti-parallel
Strand 3
A
163 165anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
145 146first strand
Strand 2
A
172 173anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il