Analysis of interatomic Contacts of Structural Units in PDB entry:
6H8P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6H8P entry

There are 2 chains in PDB entry 6H8P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ASN 9LEU 354
B
SER 3ARG 295
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 6H8P. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
9 13Right-handed 310
Helix 2
AA2
A
20 25Right-handed alpha
Helix 3
AA3
A
26 37Right-handed alpha
Helix 4
AA4
A
38 42Right-handed 310
Helix 5
AA5
A
94 103Right-handed alpha
Helix 6
AA6
A
113 125Right-handed alpha
Helix 7
AA7
A
155 157Right-handed 310
Helix 8
AA8
A
158 163Right-handed alpha
Helix 9
AA9
A
190 194Right-handed 310
Helix 10
AB1
A
212 214Right-handed 310
Helix 11
AB2
A
215 227Right-handed alpha
Helix 12
AB3
A
227 234Right-handed alpha
Helix 13
AB4
A
236 241Right-handed 310
Helix 14
AB5
A
246 253Right-handed alpha
Helix 15
AB6
A
295 303Right-handed alpha
Helix 16
AB7
A
317 325Right-handed alpha
Helix 17
AB8
A
325 334Right-handed alpha
Helix 18
AB9
A
347 354Right-handed 310
Helix 19
AC1
B
4 8Right-handed alpha
Helix 20
AC2
B
20 25Right-handed alpha
Helix 21
AC3
B
26 37Right-handed alpha
Helix 22
AC4
B
38 42Right-handed 310
Helix 23
AC5
B
61 64Right-handed 310
Helix 24
AC6
B
94 103Right-handed alpha
Helix 25
AC7
B
113 125Right-handed alpha
Helix 26
AC8
B
155 157Right-handed 310
Helix 27
AC9
B
158 165Right-handed alpha
Helix 28
AD1
B
190 194Right-handed 310
Helix 29
AD2
B
212 214Right-handed 310
Helix 30
AD3
B
215 227Right-handed alpha
Helix 31
AD4
B
227 234Right-handed alpha
Helix 32
AD5
B
236 241Right-handed 310
Helix 33
AD6
B
246 253Right-handed alpha
Helix 34
AD7
B
295 303Right-handed alpha
Helix 35
AD8
B
317 325Right-handed alpha
Helix 36
AD9
B
325 334Right-handed alpha
Helix 37
AE1
B
347 349Right-handed 310
Helix 38
AE2
B
350 355Right-handed alpha
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There are 6 sheets in PDB entry 6H8P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
15 17first strand
Strand 2
A
44 47parallel
Strand 3
A
267 270anti-parallel
Strand 4
A
195 203anti-parallel
Strand 5
A
284 291anti-parallel
Strand 6
A
175 179anti-parallel
Strand 7
A
131 137anti-parallel
Strand 8
A
71 78anti-parallel
Strand 9
A
81 88anti-parallel
Strand 10
A
243 245anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
66 67first strand
Strand 2
A
92 93anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
184 188first strand
Strand 2
A
275 280anti-parallel
Strand 3
A
206 211anti-parallel
Strand 4
A
258 262anti-parallel
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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
15 17first strand
Strand 2
B
44 47parallel
Strand 3
B
267 270anti-parallel
Strand 4
B
195 203anti-parallel
Strand 5
B
284 291anti-parallel
Strand 6
B
175 179anti-parallel
Strand 7
B
131 137anti-parallel
Strand 8
B
71 78anti-parallel
Strand 9
B
81 88anti-parallel
Strand 10
B
243 245anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
66 67first strand
Strand 2
B
92 93anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
184 188first strand
Strand 2
B
275 280anti-parallel
Strand 3
B
206 211anti-parallel
Strand 4
B
258 262anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il