Analysis of interatomic Contacts of Structural Units in PDB entry:
6HHO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6HHO entry

There are 2 chains in PDB entry 6HHO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 8GLU 294
B
 LEU 7GLU 294
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 6HHO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 15Right-handed 310
Helix 2
AA2
A
56 69Right-handed alpha
Helix 3
AA3
A
100 105Right-handed alpha
Helix 4
AA4
A
111 132Right-handed alpha
Helix 5
AA5
A
140 142Right-handed 310
Helix 6
AA6
A
162 170Right-handed alpha
Helix 7
AA7
A
194 198Right-handed 310
Helix 8
AA8
A
206 224Right-handed alpha
Helix 9
AA9
A
227 231Right-handed 310
Helix 10
AB1
A
234 244Right-handed alpha
Helix 11
AB2
A
248 252Right-handed 310
Helix 12
AB3
A
257 268Right-handed alpha
Helix 13
AB4
A
271 275Right-handed 310
Helix 14
AB5
A
277 293Right-handed alpha
Helix 15
AB6
B
13 17Right-handed 310
Helix 16
AB7
B
56 68Right-handed alpha
Helix 17
AB8
B
99 105Right-handed alpha
Helix 18
AB9
B
111 132Right-handed alpha
Helix 19
AC1
B
140 142Right-handed 310
Helix 20
AC2
B
162 171Right-handed alpha
Helix 21
AC3
B
189 193Right-handed 310
Helix 22
AC4
B
194 198Right-handed 310
Helix 23
AC5
B
206 224Right-handed alpha
Helix 24
AC6
B
233 244Right-handed alpha
Helix 25
AC7
B
248 252Right-handed 310
Helix 26
AC8
B
257 268Right-handed alpha
Helix 27
AC9
B
271 275Right-handed 310
Helix 28
AD1
B
277 292Right-handed alpha
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There are 4 sheets in PDB entry 6HHO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 12first strand
Strand 2
A
78 84parallel
Strand 3
A
87 93anti-parallel
Strand 4
A
40 49anti-parallel
Strand 5
A
30 36anti-parallel
Strand 6
A
17 23anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
98 99first strand
Strand 2
A
144 146anti-parallel
Strand 3
A
152 154anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 12first strand
Strand 2
B
78 84parallel
Strand 3
B
87 93anti-parallel
Strand 4
B
40 49anti-parallel
Strand 5
B
30 36anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
144 146first strand
Strand 2
B
152 154anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il