Analysis of interatomic Contacts of Structural Units in PDB entry:
6HKW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6HKW entry

There are 5 chains in PDB entry 6HKW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 55PHE 360
B
 GLY 55PHE 360
C
 GLY 55PHE 360
D
 GLY 55PHE 360
E
 GLY 55PHE 360
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 6HKW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
68 75Right-handed alpha
Helix 2
AA2
A
93 97Right-handed 310
Helix 3
AA3
A
310 318Right-handed 310
Helix 4
AA4
A
331 336Right-handed 310
Helix 5
AA5
A
338 347Right-handed alpha
Helix 6
AA6
B
68 75Right-handed alpha
Helix 7
AA7
B
93 97Right-handed 310
Helix 8
AA8
B
310 320Right-handed 310
Helix 9
AA9
B
331 336Right-handed 310
Helix 10
AB1
B
338 347Right-handed alpha
Helix 11
AB2
C
68 75Right-handed alpha
Helix 12
AB3
C
93 97Right-handed 310
Helix 13
AB4
C
310 320Right-handed 310
Helix 14
AB5
C
331 336Right-handed 310
Helix 15
AB6
C
338 347Right-handed alpha
Helix 16
AB7
D
68 75Right-handed alpha
Helix 17
AB8
D
93 97Right-handed 310
Helix 18
AB9
D
202 207Right-handed 310
Helix 19
AC1
D
310 320Right-handed 310
Helix 20
AC2
D
331 336Right-handed 310
Helix 21
AC3
D
338 347Right-handed alpha
Helix 22
AC4
E
68 75Right-handed alpha
Helix 23
AC5
E
93 97Right-handed 310
Helix 24
AC6
E
310 320Right-handed 310
Helix 25
AC7
E
331 336Right-handed 310
Helix 26
AC8
E
338 347Right-handed alpha
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There are 5 sheets in PDB entry 6HKW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 14 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 82first strand
Strand 2
A
102 104parallel
Strand 3
A
124 126parallel
Strand 4
A
146 148parallel
Strand 5
A
168 170parallel
Strand 6
A
190 192parallel
Strand 7
A
212 214parallel
Strand 8
A
234 236parallel
Strand 9
A
256 258parallel
Strand 10
A
278 280parallel
Strand 11
A
300 302parallel
Strand 12
A
325 327parallel
Strand 13
A
352 353parallel
Strand 14
A
356 357anti-parallel
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There are 14 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
80 82first strand
Strand 2
B
102 104parallel
Strand 3
B
124 126parallel
Strand 4
B
146 148parallel
Strand 5
B
168 170parallel
Strand 6
B
190 192parallel
Strand 7
B
212 214parallel
Strand 8
B
234 236parallel
Strand 9
B
256 258parallel
Strand 10
B
278 280parallel
Strand 11
B
300 302parallel
Strand 12
B
325 327parallel
Strand 13
B
352 353parallel
Strand 14
B
356 357anti-parallel
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There are 14 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
80 82first strand
Strand 2
C
102 104parallel
Strand 3
C
124 126parallel
Strand 4
C
146 148parallel
Strand 5
C
168 170parallel
Strand 6
C
190 192parallel
Strand 7
C
212 214parallel
Strand 8
C
234 236parallel
Strand 9
C
256 258parallel
Strand 10
C
278 280parallel
Strand 11
C
300 302parallel
Strand 12
C
325 327parallel
Strand 13
C
352 353parallel
Strand 14
C
356 357anti-parallel
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There are 14 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
80 82first strand
Strand 2
D
102 104parallel
Strand 3
D
124 126parallel
Strand 4
D
146 148parallel
Strand 5
D
168 170parallel
Strand 6
D
190 192parallel
Strand 7
D
212 214parallel
Strand 8
D
234 236parallel
Strand 9
D
256 258parallel
Strand 10
D
278 280parallel
Strand 11
D
300 302parallel
Strand 12
D
325 327parallel
Strand 13
D
352 353parallel
Strand 14
D
356 357anti-parallel
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There are 14 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
80 82first strand
Strand 2
E
102 104parallel
Strand 3
E
124 126parallel
Strand 4
E
146 148parallel
Strand 5
E
168 170parallel
Strand 6
E
190 192parallel
Strand 7
E
212 214parallel
Strand 8
E
234 236parallel
Strand 9
E
256 258parallel
Strand 10
E
278 280parallel
Strand 11
E
300 302parallel
Strand 12
E
325 327parallel
Strand 13
E
352 353parallel
Strand 14
E
356 357anti-parallel
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