Analysis of interatomic Contacts of Structural Units in PDB entry:
6HPU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6HPU entry

There are 2 chains in PDB entry 6HPU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 203	LEU 620
B	SER 203	ARG 618

There are 39 helices in PDB entry 6HPU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	208	221	Right-handed alpha
Helix 2	AA2	A	233	245	Right-handed alpha
Helix 3	AA3	A	256	262	Right-handed alpha
Helix 4	AA4	A	268	273	Right-handed alpha
Helix 5	AA5	A	280	290	Right-handed alpha
Helix 6	AA6	A	292	300	Right-handed alpha
Helix 7	AA7	A	312	328	Right-handed alpha
Helix 8	AA8	A	363	370	Right-handed alpha
Helix 9	AA9	A	384	397	Right-handed alpha
Helix 10	AB1	A	400	410	Right-handed alpha
Helix 11	AB2	A	411	413	Right-handed 310
Helix 12	AB3	A	428	442	Right-handed alpha
Helix 13	AB4	A	459	467	Right-handed alpha
Helix 14	AB5	A	554	558	Right-handed alpha
Helix 15	AB6	A	576	583	Right-handed alpha
Helix 16	AB7	A	604	609	Right-handed alpha
Helix 17	AB8	A	609	614	Right-handed alpha
Helix 18	AB9	A	615	618	Right-handed 310
Helix 19	AC1	B	208	221	Right-handed alpha
Helix 20	AC2	B	233	245	Right-handed alpha
Helix 21	AC3	B	257	264	Right-handed alpha
Helix 22	AC4	B	268	273	Right-handed alpha
Helix 23	AC5	B	280	290	Right-handed alpha
Helix 24	AC6	B	292	300	Right-handed alpha
Helix 25	AC7	B	312	328	Right-handed alpha
Helix 26	AC8	B	331	336	Right-handed 310
Helix 27	AC9	B	359	363	Right-handed 310
Helix 28	AD1	B	365	370	Right-handed alpha
Helix 29	AD2	B	384	396	Right-handed alpha
Helix 30	AD3	B	400	409	Right-handed alpha
Helix 31	AD4	B	410	412	Right-handed 310
Helix 32	AD5	B	428	441	Right-handed alpha
Helix 33	AD6	B	456	458	Right-handed 310
Helix 34	AD7	B	459	467	Right-handed alpha
Helix 35	AD8	B	554	558	Right-handed alpha
Helix 36	AD9	B	576	585	Right-handed alpha
Helix 37	AE1	B	587	589	Right-handed 310
Helix 38	AE2	B	597	601	Right-handed 310
Helix 39	AE3	B	604	616	Right-handed alpha

There are 12 sheets in PDB entry 6HPU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	266	267	first strand
Strand 2	A	250	254	parallel
Strand 3	A	302	306	parallel
Strand 4	A	337	341	parallel
Strand 5	A	225	227	parallel
Strand 6	A	373	375	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	425	426	first strand
Strand 2	A	552	553	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	448	451	first strand
Strand 2	A	472	475	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	521	523	first strand
Strand 2	A	512	516	anti-parallel
Strand 3	A	497	504	anti-parallel
Strand 4	A	480	483	anti-parallel
Strand 5	A	546	547	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	527	533	first strand
Strand 2	A	537	543	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	565	568	first strand
Strand 2	A	591	594	parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	266	267	first strand
Strand 2	B	251	254	parallel
Strand 3	B	302	306	parallel
Strand 4	B	337	341	parallel
Strand 5	B	224	228	parallel
Strand 6	B	372	376	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	425	426	first strand
Strand 2	B	552	553	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	447	448	first strand
Strand 2	B	475	476	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	521	523	first strand
Strand 2	B	513	516	anti-parallel
Strand 3	B	497	503	anti-parallel
Strand 4	B	480	483	anti-parallel
Strand 5	B	546	548	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	529	531	first strand
Strand 2	B	539	541	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	565	568	first strand
Strand 2	B	591	594	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6HPU

Analysis of interatomic Contacts of Structural Units in PDB entry:
6HPU