Analysis of interatomic Contacts of Structural Units in PDB entry:
6HUP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6HUP entry

There are 6 chains in PDB entry 6HUP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 13	ARG 418
B	ASN 8	VAL 447
C	ASP 26	LEU 436
D	THR 13	ARG 418
E	ASN 8	VAL 447
G	GLN 1	SER 529

There are 48 helices in PDB entry 6HUP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	13	23	Right-handed alpha
Helix 2	AA2	A	73	76	Right-handed 310
Helix 3	AA3	A	87	93	Right-handed alpha
Helix 4	AA4	A	174	179	Right-handed alpha
Helix 5	AA5	A	223	230	Right-handed alpha
Helix 6	AA6	A	230	244	Right-handed alpha
Helix 7	AA7	A	245	247	Right-handed 310
Helix 8	AA8	A	251	275	Right-handed alpha
Helix 9	AA9	A	284	310	Right-handed alpha
Helix 10	AB1	A	390	415	Right-handed alpha
Helix 11	AB2	B	9	21	Right-handed alpha
Helix 12	AB3	B	70	73	Right-handed 310
Helix 13	AB4	B	84	88	Right-handed 310
Helix 14	AB5	B	218	225	Right-handed alpha
Helix 15	AB6	B	225	236	Right-handed alpha
Helix 16	AB7	B	237	241	Right-handed 310
Helix 17	AB8	B	246	271	Right-handed alpha
Helix 18	AB9	B	281	309	Right-handed alpha
Helix 19	AC1	B	420	446	Right-handed alpha
Helix 20	AC2	C	27	36	Right-handed alpha
Helix 21	AC3	C	102	106	Right-handed 310
Helix 22	AC4	C	240	253	Right-handed alpha
Helix 23	AC5	C	254	257	Right-handed 310
Helix 24	AC6	C	261	286	Right-handed alpha
Helix 25	AC7	C	294	322	Right-handed alpha
Helix 26	AC8	C	406	408	Right-handed 310
Helix 27	AC9	C	409	435	Right-handed alpha
Helix 28	AD1	D	14	23	Right-handed alpha
Helix 29	AD2	D	73	76	Right-handed 310
Helix 30	AD3	D	89	93	Right-handed 310
Helix 31	AD4	D	223	230	Right-handed alpha
Helix 32	AD5	D	230	244	Right-handed alpha
Helix 33	AD6	D	245	247	Right-handed 310
Helix 34	AD7	D	251	275	Right-handed alpha
Helix 35	AD8	D	284	309	Right-handed alpha
Helix 36	AD9	D	391	415	Right-handed alpha
Helix 37	AE1	E	9	21	Right-handed alpha
Helix 38	AE2	E	70	73	Right-handed 310
Helix 39	AE3	E	84	91	Right-handed 310
Helix 40	AE4	E	139	143	Right-handed 310
Helix 41	AE5	E	170	174	Right-handed 310
Helix 42	AE6	E	218	225	Right-handed alpha
Helix 43	AE7	E	225	236	Right-handed alpha
Helix 44	AE8	E	237	242	Right-handed 310
Helix 45	AE9	E	246	272	Right-handed alpha
Helix 46	AF1	E	279	308	Right-handed alpha
Helix 47	AF2	E	420	446	Right-handed alpha
Helix 48	AF3	G	492	496	Right-handed 310

There are 20 sheets in PDB entry 6HUP. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	39	43	first strand
Strand 2	A	167	171	parallel

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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	118	121	first strand
Strand 2	A	126	138	anti-parallel
Strand 3	A	59	71	anti-parallel
Strand 4	A	44	50	anti-parallel

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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	99	101	first strand
Strand 2	A	150	159	anti-parallel
Strand 3	A	209	220	anti-parallel
Strand 4	A	198	204	anti-parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	191	195	first strand
Strand 2	A	218	221	anti-parallel

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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	164	168	first strand
Strand 2	B	36	47	parallel
Strand 3	B	56	68	anti-parallel
Strand 4	B	123	135	anti-parallel
Strand 5	B	114	118	anti-parallel
Strand 6	B	81	83	anti-parallel

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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	98	first strand
Strand 2	B	147	156	anti-parallel
Strand 3	B	204	215	anti-parallel
Strand 4	B	191	199	anti-parallel

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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	179	183	first strand
Strand 2	C	51	62	parallel
Strand 3	C	71	83	anti-parallel
Strand 4	C	138	150	anti-parallel
Strand 5	C	129	134	anti-parallel
Strand 6	C	95	98	anti-parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	57	59	first strand
Strand 2	C	188	190	parallel

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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	111	113	first strand
Strand 2	C	163	171	anti-parallel
Strand 3	C	219	231	anti-parallel
Strand 4	C	201	214	anti-parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	116	121	first strand
Strand 2	C	145	149	anti-parallel

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There are 6 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	167	171	first strand
Strand 2	D	39	50	parallel
Strand 3	D	59	69	anti-parallel
Strand 4	D	127	138	anti-parallel
Strand 5	D	117	122	anti-parallel
Strand 6	D	83	86	anti-parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	69	71	first strand
Strand 2	D	126	128	anti-parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	99	101	first strand
Strand 2	D	157	159	anti-parallel

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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	150	154	first strand
Strand 2	D	216	221	anti-parallel
Strand 3	D	191	193	anti-parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	196	204	first strand
Strand 2	D	209	217	anti-parallel

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There are 5 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	164	168	first strand
Strand 2	E	36	47	parallel
Strand 3	E	56	68	anti-parallel
Strand 4	E	123	135	anti-parallel
Strand 5	E	114	118	anti-parallel

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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	96	98	first strand
Strand 2	E	151	156	anti-parallel
Strand 3	E	204	212	anti-parallel
Strand 4	E	191	199	anti-parallel

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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	186	188	first strand
Strand 2	E	214	216	anti-parallel

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There are 3 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	3	6	first strand
Strand 2	G	424	431	anti-parallel
Strand 3	G	483	488	anti-parallel

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There are 4 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	498	502	first strand
Strand 2	G	440	446	anti-parallel
Strand 3	G	450	457	anti-parallel
Strand 4	G	463	465	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6HUP

Analysis of interatomic Contacts of Structural Units in PDB entry:
6HUP