Analysis of interatomic Contacts of Structural Units in PDB entry:
6HVD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6HVD entry

There is 1 chain in PDB entry 6HVD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 18ALA 309
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 6HVD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
29 32Right-handed 310
Helix 2
AA2
A
69 86Right-handed alpha
Helix 3
AA3
A
116 124Right-handed alpha
Helix 4
AA4
A
128 149Right-handed alpha
Helix 5
AA5
A
157 159Right-handed 310
Helix 6
AA6
A
198 203Right-handed alpha
Helix 7
AA7
A
206 210Right-handed 310
Helix 8
AA8
A
211 213Right-handed 310
Helix 9
AA9
A
214 231Right-handed alpha
Helix 10
AB1
A
239 250Right-handed alpha
Helix 11
AB2
A
257 261Right-handed 310
Helix 12
AB3
A
262 273Right-handed alpha
Helix 13
AB4
A
282 287Right-handed alpha
Helix 14
AB5
A
288 293Right-handed 310
Helix 15
AB6
A
297 309Right-handed alpha
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There are 3 sheets in PDB entry 6HVD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 26first strand
Strand 2
A
94 100parallel
Strand 3
A
103 109anti-parallel
Strand 4
A
59 66anti-parallel
Strand 5
A
48 53anti-parallel
Strand 6
A
34 41anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
114 115first strand
Strand 2
A
161 163anti-parallel
Strand 3
A
169 171anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
151 152first strand
Strand 2
A
178 179anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il