Analysis of interatomic Contacts of Structural Units in PDB entry:
6I07

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6I07 entry

There are 4 chains in PDB entry 6I07 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 1	SER 242
B	ASP 1	SER 242
C	GLU 25	PHE 259
D	GLU 25	SER 260

There are 17 helices in PDB entry 6I07. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	84	88	Right-handed 310
Helix 2	AA2	A	155	159	Right-handed 310
Helix 3	AA3	A	214	218	Right-handed 310
Helix 4	AA4	B	84	88	Right-handed 310
Helix 5	AA5	B	155	159	Right-handed 310
Helix 6	AA6	B	214	218	Right-handed 310
Helix 7	AA7	C	64	74	Right-handed alpha
Helix 8	AA8	C	158	173	Right-handed alpha
Helix 9	AA9	C	177	181	Right-handed 310
Helix 10	AB1	C	208	222	Right-handed alpha
Helix 11	AB2	C	243	247	Right-handed 310
Helix 12	AB3	D	64	74	Right-handed alpha
Helix 13	AB4	D	158	164	Right-handed alpha
Helix 14	AB5	D	164	174	Right-handed alpha
Helix 15	AB6	D	177	179	Right-handed 310
Helix 16	AB7	D	208	221	Right-handed alpha
Helix 17	AB8	D	243	247	Right-handed 310

There are 17 sheets in PDB entry 6I07. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	7	first strand
Strand 2	A	19	25	anti-parallel
Strand 3	A	75	80	anti-parallel
Strand 4	A	67	71	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	13	first strand
Strand 2	A	107	111	parallel
Strand 3	A	89	95	anti-parallel
Strand 4	A	38	43	anti-parallel
Strand 5	A	50	54	anti-parallel
Strand 6	A	58	59	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	13	first strand
Strand 2	A	107	111	parallel
Strand 3	A	89	95	anti-parallel
Strand 4	A	102	103	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	130	133	first strand
Strand 2	A	145	152	anti-parallel
Strand 3	A	205	210	anti-parallel
Strand 4	A	195	200	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	137	139	first strand
Strand 2	A	237	241	parallel
Strand 3	A	219	227	anti-parallel
Strand 4	A	161	166	anti-parallel
Strand 5	A	172	178	anti-parallel
Strand 6	A	185	187	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	137	139	first strand
Strand 2	A	237	241	parallel
Strand 3	A	219	227	anti-parallel
Strand 4	A	230	233	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	19	23	first strand
Strand 2	B	76	80	anti-parallel
Strand 3	B	67	71	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	59	first strand
Strand 2	B	49	54	anti-parallel
Strand 3	B	38	43	anti-parallel
Strand 4	B	89	95	anti-parallel
Strand 5	B	107	109	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	130	133	first strand
Strand 2	B	145	152	anti-parallel
Strand 3	B	205	210	anti-parallel
Strand 4	B	195	200	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	137	139	first strand
Strand 2	B	237	241	parallel
Strand 3	B	219	227	anti-parallel
Strand 4	B	161	166	anti-parallel
Strand 5	B	172	178	anti-parallel
Strand 6	B	185	187	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	137	139	first strand
Strand 2	B	237	241	parallel
Strand 3	B	219	227	anti-parallel
Strand 4	B	230	233	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	35	40	first strand
Strand 2	C	46	50	anti-parallel
Strand 3	C	56	58	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	108	109	first strand
Strand 2	C	117	118	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	183	187	first strand
Strand 2	C	190	196	anti-parallel
Strand 3	C	141	149	anti-parallel
Strand 4	C	248	253	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	35	40	first strand
Strand 2	D	46	50	anti-parallel
Strand 3	D	56	58	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	108	109	first strand
Strand 2	D	117	118	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	181	187	first strand
Strand 2	D	190	196	anti-parallel
Strand 3	D	141	148	anti-parallel
Strand 4	D	248	253	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6I07

Analysis of interatomic Contacts of Structural Units in PDB entry:
6I07