Analysis of interatomic Contacts of Structural Units in PDB entry:
6I53

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6I53 entry

There are 6 chains in PDB entry 6I53 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
E	SER 10	VAL 447
A	ASP 10	ARG 418
B	ASN 8	VAL 447
C	VAL 27	LEU 436
D	ASP 10	ASN 417
G	GLN 1	SER 123

There are 55 helices in PDB entry 6I53. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	E	10	20	Right-handed alpha
Helix 2	AA2	E	70	73	Right-handed 310
Helix 3	AA3	E	84	91	Right-handed 310
Helix 4	AA4	E	139	143	Right-handed 310
Helix 5	AA5	E	170	174	Right-handed 310
Helix 6	AA6	E	218	225	Right-handed alpha
Helix 7	AA7	E	225	234	Right-handed alpha
Helix 8	AA8	E	235	241	Right-handed 310
Helix 9	AA9	E	246	267	Right-handed alpha
Helix 10	AB1	E	268	272	Right-handed 310
Helix 11	AB2	E	281	308	Right-handed alpha
Helix 12	AB3	E	419	446	Right-handed alpha
Helix 13	AB4	A	12	23	Right-handed alpha
Helix 14	AB5	A	72	76	Right-handed 310
Helix 15	AB6	A	89	94	Right-handed 310
Helix 16	AB7	A	174	177	Right-handed 310
Helix 17	AB8	A	223	230	Right-handed alpha
Helix 18	AB9	A	230	242	Right-handed alpha
Helix 19	AC1	A	243	247	Right-handed 310
Helix 20	AC2	A	251	272	Right-handed alpha
Helix 21	AC3	A	286	310	Right-handed alpha
Helix 22	AC4	A	390	415	Right-handed alpha
Helix 23	AC5	B	9	20	Right-handed alpha
Helix 24	AC6	B	70	73	Right-handed 310
Helix 25	AC7	B	84	91	Right-handed 310
Helix 26	AC8	B	139	143	Right-handed 310
Helix 27	AC9	B	218	225	Right-handed alpha
Helix 28	AD1	B	225	236	Right-handed alpha
Helix 29	AD2	B	237	241	Right-handed 310
Helix 30	AD3	B	246	269	Right-handed alpha
Helix 31	AD4	B	270	272	Right-handed 310
Helix 32	AD5	B	281	306	Right-handed alpha
Helix 33	AD6	B	419	446	Right-handed alpha
Helix 34	AD7	C	28	36	Right-handed alpha
Helix 35	AD8	C	85	88	Right-handed 310
Helix 36	AD9	C	102	106	Right-handed 310
Helix 37	AE1	C	234	240	Right-handed alpha
Helix 38	AE2	C	240	249	Right-handed alpha
Helix 39	AE3	C	250	256	Right-handed 310
Helix 40	AE4	C	261	283	Right-handed alpha
Helix 41	AE5	C	294	323	Right-handed alpha
Helix 42	AE6	C	409	433	Right-handed alpha
Helix 43	AE7	D	12	24	Right-handed alpha
Helix 44	AE8	D	89	93	Right-handed 310
Helix 45	AE9	D	142	146	Right-handed 310
Helix 46	AF1	D	174	178	Right-handed 310
Helix 47	AF2	D	223	230	Right-handed alpha
Helix 48	AF3	D	230	242	Right-handed alpha
Helix 49	AF4	D	243	247	Right-handed 310
Helix 50	AF5	D	251	272	Right-handed alpha
Helix 51	AF6	D	273	277	Right-handed 310
Helix 52	AF7	D	286	311	Right-handed alpha
Helix 53	AF8	D	390	415	Right-handed alpha
Helix 54	AF9	G	86	90	Right-handed 310
Helix 55	AG1	G	106	110	Right-handed 310

There are 24 sheets in PDB entry 6I53. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	164	168	first strand
Strand 2	E	36	47	parallel
Strand 3	E	56	66	anti-parallel
Strand 4	E	128	135	anti-parallel
Strand 5	E	104	106	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	66	68	first strand
Strand 2	E	123	128	anti-parallel
Strand 3	E	114	118	anti-parallel
Strand 4	E	81	83	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	96	98	first strand
Strand 2	E	153	156	anti-parallel
Strand 3	E	204	212	anti-parallel
Strand 4	E	191	199	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	186	188	first strand
Strand 2	E	214	216	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	167	171	first strand
Strand 2	A	39	49	parallel
Strand 3	A	59	69	anti-parallel
Strand 4	A	127	138	anti-parallel
Strand 5	A	117	122	anti-parallel
Strand 6	A	83	86	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	45	47	first strand
Strand 2	A	179	181	parallel

Back to list of sheets
Back to top of page

There are 4 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	99	101	first strand
Strand 2	A	150	159	anti-parallel
Strand 3	A	209	220	anti-parallel
Strand 4	A	193	204	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	164	168	first strand
Strand 2	B	36	47	parallel
Strand 3	B	56	66	anti-parallel
Strand 4	B	124	135	anti-parallel
Strand 5	B	114	118	anti-parallel
Strand 6	B	81	83	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	66	68	first strand
Strand 2	B	123	125	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	98	first strand
Strand 2	B	147	156	anti-parallel
Strand 3	B	207	216	anti-parallel
Strand 4	B	186	188	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	191	200	first strand
Strand 2	B	203	212	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	101	106	first strand
Strand 2	B	130	134	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	179	183	first strand
Strand 2	C	51	62	parallel
Strand 3	C	71	83	anti-parallel
Strand 4	C	138	150	anti-parallel
Strand 5	C	129	134	anti-parallel
Strand 6	C	95	98	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	57	59	first strand
Strand 2	C	188	190	parallel

Back to list of sheets
Back to top of page

There are 4 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	111	113	first strand
Strand 2	C	162	171	anti-parallel
Strand 3	C	218	231	anti-parallel
Strand 4	C	201	215	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	116	121	first strand
Strand 2	C	145	149	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	167	171	first strand
Strand 2	D	39	49	parallel
Strand 3	D	59	71	anti-parallel
Strand 4	D	126	138	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	83	85	first strand
Strand 2	D	120	122	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	150	158	first strand
Strand 2	D	212	221	anti-parallel
Strand 3	D	191	193	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	196	199	first strand
Strand 2	D	214	217	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	202	204	first strand
Strand 2	D	209	211	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	3	6	first strand
Strand 2	G	18	25	anti-parallel
Strand 3	G	77	82	anti-parallel
Strand 4	G	68	72	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	11	13	first strand
Strand 2	G	120	122	parallel

Back to list of sheets
Back to top of page

There are 5 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	117	119	first strand
Strand 2	G	91	98	anti-parallel
Strand 3	G	33	39	anti-parallel
Strand 4	G	45	51	anti-parallel
Strand 5	G	57	59	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6I53

Analysis of interatomic Contacts of Structural Units in PDB entry:
6I53