Analysis of interatomic Contacts of Structural Units in PDB entry:
6I5J

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6I5J entry

There are 19 chains in PDB entry 6I5J (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 30	ILE 110
A	VAL 112	MET 132
A	LYS 134	VAL 198
B	MET 1	LEU 88
B	ILE 90	LYS 104
C	MET 16	CYS 112
D	SER 30	MET 132
D	LYS 134	VAL 198
E	MET 1	LEU 88
E	ILE 90	MET 103
F	MET 16	CYS 112
I	PRO -4	ASP -1
I	THR 1	ILE 5
J	PRO -4	ASP -1
J	THR 1	ILE 5
K	VAL -3	ASP -1
K	THR 1	ILE 5
L	PRO -2	ASP -1
L	THR 1	ILE 5

There are 28 helices in PDB entry 6I5J. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	31	47	Right-handed alpha
Helix 2	AA2	A	54	62	Right-handed alpha
Helix 3	AA3	A	112	116	Right-handed 310
Helix 4	AA4	A	121	133	Right-handed alpha
Helix 5	AA5	A	162	173	Right-handed alpha
Helix 6	AA6	A	177	181	Right-handed 310
Helix 7	AA7	A	184	193	Right-handed alpha
Helix 8	AA8	B	23	36	Right-handed alpha
Helix 9	AA9	B	38	40	Right-handed 310
Helix 10	AB1	B	56	61	Right-handed alpha
Helix 11	AB2	C	33	37	Right-handed alpha
Helix 12	AB3	C	39	47	Right-handed alpha
Helix 13	AB4	C	66	83	Right-handed alpha
Helix 14	AB5	C	96	111	Right-handed alpha
Helix 15	AB6	D	31	47	Right-handed alpha
Helix 16	AB7	D	54	62	Right-handed alpha
Helix 17	AB8	D	109	113	Right-handed 310
Helix 18	AB9	D	121	133	Right-handed alpha
Helix 19	AC1	D	134	136	Right-handed 310
Helix 20	AC2	D	162	175	Right-handed alpha
Helix 21	AC3	D	177	181	Right-handed 310
Helix 22	AC4	D	184	193	Right-handed alpha
Helix 23	AC5	E	23	36	Right-handed alpha
Helix 24	AC6	E	38	40	Right-handed 310
Helix 25	AC7	F	33	37	Right-handed alpha
Helix 26	AC8	F	39	47	Right-handed alpha
Helix 27	AC9	F	66	83	Right-handed alpha
Helix 28	AD1	F	99	111	Right-handed alpha

There are 8 sheets in PDB entry 6I5J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	70	74	first strand
Strand 2	A	82	88	anti-parallel
Strand 3	A	91	100	anti-parallel
Strand 4	A	103	106	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	49	50	first strand
Strand 2	B	42	46	anti-parallel
Strand 3	B	73	81	anti-parallel
Strand 4	B	84	85	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	49	50	first strand
Strand 2	B	42	46	anti-parallel
Strand 3	B	73	81	anti-parallel
Strand 4	B	2	9	parallel
Strand 5	B	12	19	anti-parallel
Strand 6	C	28	32	parallel
Strand 7	C	18	22	anti-parallel
Strand 8	C	59	61	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	56	57	first strand
Strand 2	F	55	56	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	70	74	first strand
Strand 2	D	82	88	anti-parallel
Strand 3	D	91	100	anti-parallel
Strand 4	D	103	106	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	148	149	first strand
Strand 2	L	4	6	anti-parallel
Strand 3	J	2	3	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	49	50	first strand
Strand 2	E	42	46	anti-parallel
Strand 3	E	73	79	anti-parallel
Strand 4	E	2	9	parallel
Strand 5	E	12	19	anti-parallel
Strand 6	F	28	32	parallel
Strand 7	F	18	22	anti-parallel
Strand 8	F	59	61	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	2	6	first strand
Strand 2	K	2	6	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6I5J

Analysis of interatomic Contacts of Structural Units in PDB entry:
6I5J