Analysis of interatomic Contacts of Structural Units in PDB entry:
6IGM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6IGM entry

There are 9 chains in PDB entry 6IGM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 13	ILE 446
B	VAL 16	ALA 449
C	THR 12	ILE 446
D	ARG 18	ALA 449
E	THR 12	SER 443
F	THR 17	GLN 447
G	MET 1	PHE 394
H	LYS 851	ALA 2190
X	UNK 1	UNK 62

There are117 helices in PDB entry 6IGM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	42	58	Right-handed alpha
Helix 2	AA2	A	75	88	Right-handed alpha
Helix 3	AA3	A	99	101	Right-handed 310
Helix 4	AA4	A	107	120	Right-handed alpha
Helix 5	AA5	A	173	183	Right-handed alpha
Helix 6	AA6	A	240	249	Right-handed alpha
Helix 7	AA7	A	274	289	Right-handed alpha
Helix 8	AA8	A	308	319	Right-handed alpha
Helix 9	AA9	A	347	350	Right-handed 310
Helix 10	AB1	A	351	356	Right-handed alpha
Helix 11	AB2	A	367	369	Right-handed 310
Helix 12	AB3	A	370	383	Right-handed alpha
Helix 13	AB4	A	388	401	Right-handed alpha
Helix 14	AB5	A	402	421	Right-handed alpha
Helix 15	AB6	A	426	437	Right-handed alpha
Helix 16	AB7	A	439	446	Right-handed alpha
Helix 17	AB8	B	49	66	Right-handed alpha
Helix 18	AB9	B	82	93	Right-handed alpha
Helix 19	AC1	B	114	127	Right-handed alpha
Helix 20	AC2	B	176	180	Right-handed 310
Helix 21	AC3	B	245	252	Right-handed alpha
Helix 22	AC4	B	254	260	Right-handed alpha
Helix 23	AC5	B	274	283	Right-handed alpha
Helix 24	AC6	B	305	316	Right-handed alpha
Helix 25	AC7	B	342	346	Right-handed 310
Helix 26	AC8	B	347	352	Right-handed alpha
Helix 27	AC9	B	363	378	Right-handed alpha
Helix 28	AD1	B	383	397	Right-handed alpha
Helix 29	AD2	B	398	417	Right-handed alpha
Helix 30	AD3	B	422	433	Right-handed alpha
Helix 31	AD4	B	440	444	Right-handed 310
Helix 32	AD5	C	42	59	Right-handed alpha
Helix 33	AD6	C	75	88	Right-handed alpha
Helix 34	AD7	C	110	120	Right-handed alpha
Helix 35	AD8	C	240	249	Right-handed alpha
Helix 36	AD9	C	271	276	Right-handed alpha
Helix 37	AE1	C	277	288	Right-handed alpha
Helix 38	AE2	C	308	320	Right-handed alpha
Helix 39	AE3	C	351	356	Right-handed alpha
Helix 40	AE4	C	367	383	Right-handed alpha
Helix 41	AE5	C	387	401	Right-handed alpha
Helix 42	AE6	C	402	409	Right-handed alpha
Helix 43	AE7	C	410	421	Right-handed alpha
Helix 44	AE8	C	426	437	Right-handed alpha
Helix 45	AE9	C	440	446	Right-handed alpha
Helix 46	AF1	D	49	66	Right-handed alpha
Helix 47	AF2	D	84	93	Right-handed alpha
Helix 48	AF3	D	114	126	Right-handed alpha
Helix 49	AF4	D	176	185	Right-handed alpha
Helix 50	AF5	D	246	252	Right-handed alpha
Helix 51	AF6	D	271	286	Right-handed alpha
Helix 52	AF7	D	300	304	Right-handed 310
Helix 53	AF8	D	305	316	Right-handed alpha
Helix 54	AF9	D	347	354	Right-handed alpha
Helix 55	AG1	D	363	378	Right-handed alpha
Helix 56	AG2	D	386	397	Right-handed alpha
Helix 57	AG3	D	398	417	Right-handed alpha
Helix 58	AG4	D	422	433	Right-handed alpha
Helix 59	AG5	D	435	442	Right-handed alpha
Helix 60	AG6	E	42	59	Right-handed alpha
Helix 61	AG7	E	75	86	Right-handed alpha
Helix 62	AG8	E	97	102	Right-handed alpha
Helix 63	AG9	E	107	120	Right-handed alpha
Helix 64	AH1	E	173	183	Right-handed alpha
Helix 65	AH2	E	240	249	Right-handed alpha
Helix 66	AH3	E	271	288	Right-handed alpha
Helix 67	AH4	E	308	319	Right-handed alpha
Helix 68	AH5	E	346	350	Right-handed 310
Helix 69	AH6	E	351	356	Right-handed alpha
Helix 70	AH7	E	367	369	Right-handed 310
Helix 71	AH8	E	370	383	Right-handed alpha
Helix 72	AH9	E	387	401	Right-handed alpha
Helix 73	AI1	E	402	409	Right-handed alpha
Helix 74	AI2	E	410	421	Right-handed alpha
Helix 75	AI3	E	426	437	Right-handed alpha
Helix 76	AI4	F	49	66	Right-handed alpha
Helix 77	AI5	F	82	93	Right-handed alpha
Helix 78	AI6	F	116	125	Right-handed alpha
Helix 79	AI7	F	245	252	Right-handed alpha
Helix 80	AI8	F	268	286	Right-handed alpha
Helix 81	AI9	F	305	316	Right-handed alpha
Helix 82	AJ1	F	342	346	Right-handed 310
Helix 83	AJ2	F	350	354	Right-handed 310
Helix 84	AJ3	F	363	375	Right-handed alpha
Helix 85	AJ4	F	385	397	Right-handed alpha
Helix 86	AJ5	F	398	417	Right-handed alpha
Helix 87	AJ6	F	422	433	Right-handed alpha
Helix 88	AJ7	F	435	440	Right-handed alpha
Helix 89	AJ8	G	68	80	Right-handed alpha
Helix 90	AJ9	G	102	116	Right-handed alpha
Helix 91	AK1	G	126	135	Right-handed alpha
Helix 92	AK2	G	176	191	Right-handed alpha
Helix 93	AK3	G	200	209	Right-handed alpha
Helix 94	AK4	G	216	223	Right-handed alpha
Helix 95	AK5	G	271	275	Right-handed 310
Helix 96	AK6	G	277	283	Right-handed alpha
Helix 97	AK7	G	284	287	Right-handed 310
Helix 98	AK8	G	296	302	Right-handed alpha
Helix 99	AK9	G	304	308	Right-handed 310
Helix 100	AL1	G	309	315	Right-handed alpha
Helix 101	AL2	G	323	326	Right-handed 310
Helix 102	AL3	G	328	339	Right-handed alpha
Helix 103	AL4	G	357	367	Right-handed alpha
Helix 104	AL5	G	378	382	Right-handed 310
Helix 105	AL6	H	862	873	Right-handed alpha
Helix 106	AL7	H	894	901	Right-handed alpha
Helix 107	AL8	H	954	974	Right-handed alpha
Helix 108	AL9	H	1901	1928	Right-handed alpha
Helix 109	AM1	H	2004	2015	Right-handed alpha
Helix 110	AM2	H	2016	2018	Right-handed 310
Helix 111	AM3	H	2036	2042	Right-handed alpha
Helix 112	AM4	H	2042	2056	Right-handed alpha
Helix 113	AM5	H	2068	2080	Right-handed alpha
Helix 114	AM6	H	2094	2103	Right-handed alpha
Helix 115	AM7	H	2144	2153	Right-handed alpha
Helix 116	AM8	H	2172	2190	Right-handed alpha
Helix 117	AM9	X	53	62	Right-handed alpha

There are 28 sheets in PDB entry 6IGM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	93	97	first strand
Strand 2	A	298	302	parallel
Strand 3	A	326	330	parallel
Strand 4	A	65	69	parallel
Strand 5	A	359	362	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	237	239	first strand
Strand 2	A	121	123	anti-parallel
Strand 3	A	293	295	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	157	163	first strand
Strand 2	A	166	172	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	191	193	first strand
Strand 2	A	199	201	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	336	337	first strand
Strand 2	A	345	346	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	104	first strand
Strand 2	B	295	299	parallel
Strand 3	B	324	328	parallel
Strand 4	B	72	77	parallel
Strand 5	B	354	359	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	240	242	first strand
Strand 2	B	128	131	anti-parallel
Strand 3	B	290	292	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	134	137	first strand
Strand 2	B	234	237	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	141	142	first strand
Strand 2	B	161	164	anti-parallel
Strand 3	B	170	172	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	381	382	first strand
Strand 2	B	420	421	parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	93	96	first strand
Strand 2	C	298	302	parallel
Strand 3	C	326	330	parallel
Strand 4	C	65	69	parallel
Strand 5	C	359	362	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	232	239	first strand
Strand 2	C	121	128	anti-parallel
Strand 3	C	293	295	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	158	162	first strand
Strand 2	C	167	171	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	335	337	first strand
Strand 2	C	345	347	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	100	104	first strand
Strand 2	D	295	299	parallel
Strand 3	D	323	327	parallel
Strand 4	D	72	76	parallel
Strand 5	D	355	358	parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	236	243	first strand
Strand 2	D	127	135	anti-parallel
Strand 3	D	292	293	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	141	145	first strand
Strand 2	D	160	164	anti-parallel
Strand 3	D	169	172	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	332	334	first strand
Strand 2	D	341	343	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	93	95	first strand
Strand 2	E	298	302	parallel
Strand 3	E	326	330	parallel
Strand 4	E	65	69	parallel
Strand 5	E	358	362	parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	230	239	first strand
Strand 2	E	121	130	anti-parallel
Strand 3	E	292	295	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	134	137	first strand
Strand 2	E	157	163	anti-parallel
Strand 3	E	166	172	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	100	103	first strand
Strand 2	F	295	299	parallel
Strand 3	F	323	327	parallel
Strand 4	F	72	76	parallel
Strand 5	F	355	358	parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	192	197	first strand
Strand 2	F	128	141	anti-parallel
Strand 3	F	233	242	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	192	197	first strand
Strand 2	F	128	141	anti-parallel
Strand 3	F	289	292	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	13	16	first strand
Strand 2	G	3	8	anti-parallel
Strand 3	G	92	95	parallel
Strand 4	G	122	123	parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	171	173	first strand
Strand 2	G	155	161	anti-parallel
Strand 3	G	144	150	anti-parallel
Strand 4	G	317	321	parallel
Strand 5	G	349	350	parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	854	859	first strand
Strand 2	H	2163	2168	parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	2062	2066	first strand
Strand 2	H	2113	2117	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6IGM

Analysis of interatomic Contacts of Structural Units in PDB entry:
6IGM