Analysis of interatomic Contacts of Structural Units in PDB entry:
6INO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6INO entry

There are 2 chains in PDB entry 6INO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 22	LYS 489
B	THR 22	SER 490

There are 22 helices in PDB entry 6INO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	53	55	Right-handed 310
Helix 2	AA2	A	95	98	Right-handed 310
Helix 3	AA3	A	134	138	Right-handed 310
Helix 4	AA4	A	147	151	Right-handed 310
Helix 5	AA5	A	199	204	Right-handed alpha
Helix 6	AA6	A	215	220	Right-handed 310
Helix 7	AA7	A	239	249	Right-handed alpha
Helix 8	AA8	A	259	270	Right-handed alpha
Helix 9	AA9	A	321	324	Right-handed 310
Helix 10	AB1	A	383	394	Right-handed alpha
Helix 11	AB2	A	403	414	Right-handed alpha
Helix 12	AB3	B	53	55	Right-handed 310
Helix 13	AB4	B	95	98	Right-handed 310
Helix 14	AB5	B	134	138	Right-handed 310
Helix 15	AB6	B	147	152	Right-handed 310
Helix 16	AB7	B	199	204	Right-handed alpha
Helix 17	AB8	B	215	220	Right-handed 310
Helix 18	AB9	B	239	249	Right-handed alpha
Helix 19	AC1	B	259	270	Right-handed alpha
Helix 20	AC2	B	321	324	Right-handed 310
Helix 21	AC3	B	383	394	Right-handed alpha
Helix 22	AC4	B	403	414	Right-handed alpha

There are 22 sheets in PDB entry 6INO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	43	47	first strand
Strand 2	A	34	40	anti-parallel
Strand 3	A	25	29	anti-parallel
Strand 4	A	57	60	anti-parallel
Strand 5	A	66	68	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	43	47	first strand
Strand 2	A	34	40	anti-parallel
Strand 3	A	25	29	anti-parallel
Strand 4	A	140	141	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	74	76	first strand
Strand 2	A	87	89	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	84	85	first strand
Strand 2	A	128	130	anti-parallel
Strand 3	A	116	118	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	100	103	first strand
Strand 2	A	107	110	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	172	173	first strand
Strand 2	A	178	179	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	193	195	first strand
Strand 2	A	206	208	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	221	222	first strand
Strand 2	A	229	238	anti-parallel
Strand 3	A	336	342	anti-parallel
Strand 4	A	277	282	parallel
Strand 5	A	291	292	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	253	254	first strand
Strand 2	A	336	342	anti-parallel
Strand 3	A	277	282	parallel
Strand 4	A	316	319	anti-parallel
Strand 5	A	327	330	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	367	369	first strand
Strand 2	A	372	382	anti-parallel
Strand 3	A	482	488	anti-parallel
Strand 4	A	421	427	parallel
Strand 5	A	436	437	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	397	398	first strand
Strand 2	A	482	488	anti-parallel
Strand 3	A	421	427	parallel
Strand 4	A	463	467	anti-parallel
Strand 5	A	473	476	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	43	47	first strand
Strand 2	B	34	40	anti-parallel
Strand 3	B	25	29	anti-parallel
Strand 4	B	57	60	anti-parallel
Strand 5	B	66	68	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	43	47	first strand
Strand 2	B	34	40	anti-parallel
Strand 3	B	25	29	anti-parallel
Strand 4	B	140	141	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	74	76	first strand
Strand 2	B	87	89	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	84	85	first strand
Strand 2	B	128	130	anti-parallel
Strand 3	B	116	118	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	103	first strand
Strand 2	B	107	110	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	172	174	first strand
Strand 2	B	177	179	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	193	195	first strand
Strand 2	B	206	208	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	221	222	first strand
Strand 2	B	229	238	anti-parallel
Strand 3	B	336	342	anti-parallel
Strand 4	B	277	282	parallel
Strand 5	B	291	292	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	253	254	first strand
Strand 2	B	336	342	anti-parallel
Strand 3	B	277	282	parallel
Strand 4	B	316	319	anti-parallel
Strand 5	B	327	330	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	367	369	first strand
Strand 2	B	372	382	anti-parallel
Strand 3	B	482	489	anti-parallel
Strand 4	B	421	427	parallel
Strand 5	B	436	437	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	397	398	first strand
Strand 2	B	482	489	anti-parallel
Strand 3	B	421	427	parallel
Strand 4	B	463	467	anti-parallel
Strand 5	B	473	476	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6INO

Analysis of interatomic Contacts of Structural Units in PDB entry:
6INO