Analysis of interatomic Contacts of Structural Units in PDB entry:
6IY3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6IY3 entry

There are 11 chains in PDB entry 6IY3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
LYS 36ALA 135
B
LYS 20GLY 102
C
ARG 11GLU 121
D
LYS 28LYS 125
E
LYS 37ALA 135
F
ALA 15GLY 102
G
LYS 9PRO 117
H
ARG 29LYS 125
J
A 1 T 147
I
A 1 T 147
O
LEU 670GLY 1348
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 65 helices in PDB entry 6IY3. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
44 57Right-handed alpha
Helix 2
AA2
A
63 77Right-handed alpha
Helix 3
AA3
A
85 114Right-handed alpha
Helix 4
AA4
A
120 131Right-handed alpha
Helix 5
AA5
B
25 29Right-handed 310
Helix 6
AA6
B
30 42Right-handed alpha
Helix 7
AA7
B
49 76Right-handed alpha
Helix 8
AA8
B
82 94Right-handed alpha
Helix 9
AA9
C
16 22Right-handed alpha
Helix 10
AB1
C
26 37Right-handed alpha
Helix 11
AB2
C
45 73Right-handed alpha
Helix 12
AB3
C
79 90Right-handed alpha
Helix 13
AB4
C
90 97Right-handed alpha
Helix 14
AB5
D
37 49Right-handed alpha
Helix 15
AB6
D
55 84Right-handed alpha
Helix 16
AB7
D
90 102Right-handed alpha
Helix 17
AB8
D
103 124Right-handed alpha
Helix 18
AB9
E
44 57Right-handed alpha
Helix 19
AC1
E
63 77Right-handed alpha
Helix 20
AC2
E
85 114Right-handed alpha
Helix 21
AC3
E
120 131Right-handed alpha
Helix 22
AC4
F
25 29Right-handed 310
Helix 23
AC5
F
30 41Right-handed alpha
Helix 24
AC6
F
49 76Right-handed alpha
Helix 25
AC7
F
82 94Right-handed alpha
Helix 26
AC8
G
16 22Right-handed alpha
Helix 27
AC9
G
26 37Right-handed alpha
Helix 28
AD1
G
46 73Right-handed alpha
Helix 29
AD2
G
79 90Right-handed alpha
Helix 30
AD3
G
90 97Right-handed alpha
Helix 31
AD4
H
37 49Right-handed alpha
Helix 32
AD5
H
56 84Right-handed alpha
Helix 33
AD6
H
90 102Right-handed alpha
Helix 34
AD7
H
103 124Right-handed alpha
Helix 35
AD8
O
671 683Right-handed alpha
Helix 36
AD9
O
684 689Right-handed alpha
Helix 37
AE1
O
744 749Right-handed alpha
Helix 38
AE2
O
768 784Right-handed alpha
Helix 39
AE3
O
797 812Right-handed alpha
Helix 40
AE4
O
827 839Right-handed alpha
Helix 41
AE5
O
850 862Right-handed alpha
Helix 42
AE6
O
873 879Right-handed alpha
Helix 43
AE7
O
879 885Right-handed alpha
Helix 44
AE8
O
895 900Right-handed alpha
Helix 45
AE9
O
904 912Right-handed alpha
Helix 46
AF1
O
933 938Right-handed alpha
Helix 47
AF2
O
943 950Right-handed alpha
Helix 48
AF3
O
951 958Right-handed alpha
Helix 49
AF4
O
976 987Right-handed alpha
Helix 50
AF5
O
1021 1031Right-handed alpha
Helix 51
AF6
O
1050 1061Right-handed alpha
Helix 52
AF7
O
1068 1073Right-handed alpha
Helix 53
AF8
O
1082 1085Right-handed 310
Helix 54
AF9
O
1086 1103Right-handed alpha
Helix 55
AG1
O
1113 1126Right-handed alpha
Helix 56
AG2
O
1139 1150Right-handed alpha
Helix 57
AG3
O
1189 1194Right-handed alpha
Helix 58
AG4
O
1194 1199Right-handed alpha
Helix 59
AG5
O
1216 1228Right-handed alpha
Helix 60
AG6
O
1231 1243Right-handed alpha
Helix 61
AG7
O
1248 1263Right-handed alpha
Helix 62
AG8
O
1264 1268Right-handed 310
Helix 63
AG9
O
1279 1288Right-handed alpha
Helix 64
AH1
O
1290 1304Right-handed alpha
Helix 65
AH2
O
1337 1344Right-handed alpha
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There are 11 sheets in PDB entry 6IY3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
118 119first strand
Strand 2
B
45 46parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
97 98first strand
Strand 2
G
101 102parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
42 43first strand
Strand 2
D
88 89parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
77 78first strand
Strand 2
D
53 54parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
101 102first strand
Strand 2
F
97 98parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
83 84first strand
Strand 2
F
80 81parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
118 119first strand
Strand 2
F
45 46parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
77 78first strand
Strand 2
H
53 54parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
O
789 790first strand
Strand 2
O
921 922parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
O
844 845first strand
Strand 2
O
868 869parallel
Strand 3
O
819 822parallel
Strand 4
O
890 893parallel
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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
O
1007 1008first strand
Strand 2
O
1207 1210parallel
Strand 3
O
1177 1180parallel
Strand 4
O
1106 1109parallel
Strand 5
O
1158 1160parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il