Analysis of interatomic Contacts of Structural Units in PDB entry:
6J0K


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6J0K entry

There are 2 chains in PDB entry 6J0K (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 295PRO 485
B
 ALA 295PRO 485
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 5 helices in PDB entry 6J0K. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
295 307Right-handed alpha
Helix 2
AA2
A
396 399Right-handed 310
Helix 3
AA3
B
296 307Right-handed alpha
Helix 4
AA4
B
315 319Right-handed 310
Helix 5
AA5
B
396 399Right-handed 310
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There are 6 sheets in PDB entry 6J0K. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
308 309first strand
Strand 2
A
364 370parallel
Strand 3
A
479 481anti-parallel
Strand 4
A
331 334anti-parallel
Strand 5
A
323 325anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
308 309first strand
Strand 2
A
364 370parallel
Strand 3
A
430 436anti-parallel
Strand 4
A
441 446anti-parallel
Strand 5
A
452 455anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
353 355first strand
Strand 2
A
465 470anti-parallel
Strand 3
A
377 383anti-parallel
Strand 4
A
401 407anti-parallel
Strand 5
A
411 414anti-parallel
Strand 6
A
420 422anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
308 309first strand
Strand 2
B
364 370parallel
Strand 3
B
479 481anti-parallel
Strand 4
B
331 334anti-parallel
Strand 5
B
323 325anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
308 309first strand
Strand 2
B
364 370parallel
Strand 3
B
430 436anti-parallel
Strand 4
B
441 446anti-parallel
Strand 5
B
452 455anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
353 355first strand
Strand 2
B
465 470anti-parallel
Strand 3
B
377 383anti-parallel
Strand 4
B
401 407anti-parallel
Strand 5
B
411 414anti-parallel
Strand 6
B
420 421anti-parallel
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