Analysis of interatomic Contacts of Structural Units in PDB entry:
6J1Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6J1Y entry

There are 2 chains in PDB entry 6J1Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 430THR 916
B
 VAL 417THR 916
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 51 helices in PDB entry 6J1Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
430 444Right-handed alpha
Helix 2
AA2
A
445 449Right-handed 310
Helix 3
AA3
A
546 561Right-handed alpha
Helix 4
AA4
A
572 574Right-handed 310
Helix 5
AA5
A
575 587Right-handed alpha
Helix 6
AA6
A
589 594Right-handed 310
Helix 7
AA7
A
609 623Right-handed alpha
Helix 8
AA8
A
624 629Right-handed 310
Helix 9
AA9
A
644 650Right-handed 310
Helix 10
AB1
A
652 670Right-handed alpha
Helix 11
AB2
A
679 687Right-handed alpha
Helix 12
AB3
A
692 698Right-handed alpha
Helix 13
AB4
A
700 713Right-handed alpha
Helix 14
AB5
A
714 719Right-handed alpha
Helix 15
AB6
A
742 746Right-handed 310
Helix 16
AB7
A
752 766Right-handed alpha
Helix 17
AB8
A
769 784Right-handed alpha
Helix 18
AB9
A
785 790Right-handed 310
Helix 19
AC1
A
793 803Right-handed alpha
Helix 20
AC2
A
808 815Right-handed alpha
Helix 21
AC3
A
825 838Right-handed alpha
Helix 22
AC4
A
839 852Right-handed alpha
Helix 23
AC5
A
859 863Right-handed 310
Helix 24
AC6
A
889 891Right-handed 310
Helix 25
AC7
A
901 915Right-handed alpha
Helix 26
AC8
B
419 427Right-handed alpha
Helix 27
AC9
B
429 444Right-handed alpha
Helix 28
AD1
B
445 449Right-handed 310
Helix 29
AD2
B
486 491Right-handed 310
Helix 30
AD3
B
546 560Right-handed alpha
Helix 31
AD4
B
572 574Right-handed 310
Helix 32
AD5
B
575 586Right-handed alpha
Helix 33
AD6
B
589 594Right-handed 310
Helix 34
AD7
B
611 623Right-handed alpha
Helix 35
AD8
B
624 629Right-handed 310
Helix 36
AD9
B
646 650Right-handed 310
Helix 37
AE1
B
652 671Right-handed alpha
Helix 38
AE2
B
679 687Right-handed alpha
Helix 39
AE3
B
692 694Right-handed 310
Helix 40
AE4
B
695 700Right-handed alpha
Helix 41
AE5
B
700 713Right-handed alpha
Helix 42
AE6
B
752 767Right-handed alpha
Helix 43
AE7
B
769 782Right-handed alpha
Helix 44
AE8
B
785 790Right-handed 310
Helix 45
AE9
B
793 803Right-handed alpha
Helix 46
AF1
B
808 815Right-handed alpha
Helix 47
AF2
B
825 837Right-handed alpha
Helix 48
AF3
B
839 852Right-handed alpha
Helix 49
AF4
B
859 863Right-handed 310
Helix 50
AF5
B
889 891Right-handed 310
Helix 51
AF6
B
901 915Right-handed alpha
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There are 10 sheets in PDB entry 6J1Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
566 571first strand
Strand 2
A
595 600parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
640 641first strand
Strand 2
A
677 678parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
725 730first strand
Strand 2
A
733 738anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
816 819first strand
Strand 2
A
873 877parallel
Strand 3
A
893 896parallel
Strand 4
A
886 888anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
865 866first strand
Strand 2
A
869 870anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
462 466first strand
Strand 2
B
472 476anti-parallel
Strand 3
B
481 483anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
502 506first strand
Strand 2
B
512 516anti-parallel
Strand 3
B
521 523anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
566 571first strand
Strand 2
B
595 600parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
817 819first strand
Strand 2
B
874 877parallel
Strand 3
B
893 896parallel
Strand 4
B
886 888anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
865 866first strand
Strand 2
B
869 870anti-parallel
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