Analysis of interatomic Contacts of Structural Units in PDB entry:
6J8E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6J8E entry

There are 3 chains in PDB entry 6J8E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 GLY 27MET 148
A
 PRO 117GLU 1785
D
 CYS 1CYS 16
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 62 helices in PDB entry 6J8E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
104 108Right-handed 310
Helix 2
AA2
C
118 122Right-handed 310
Helix 3
AA3
A
118 122Right-handed alpha
Helix 4
AA4
A
123 128Right-handed alpha
Helix 5
AA5
A
128 146Right-handed alpha
Helix 6
AA6
A
155 175Right-handed alpha
Helix 7
AA7
A
189 203Right-handed alpha
Helix 8
AA8
A
204 207Right-handed 310
Helix 9
AA9
A
217 225Right-handed 310
Helix 10
AB1
A
226 231Right-handed alpha
Helix 11
AB2
A
233 246Right-handed alpha
Helix 12
AB3
A
247 249Right-handed 310
Helix 13
AB4
A
250 270Right-handed alpha
Helix 14
AB5
A
272 274Right-handed 310
Helix 15
AB6
A
369 382Right-handed alpha
Helix 16
AB7
A
385 397Right-handed alpha
Helix 17
AB8
A
398 400Right-handed 310
Helix 18
AB9
A
401 412Right-handed alpha
Helix 19
AC1
A
414 441Right-handed alpha
Helix 20
AC2
A
741 754Right-handed alpha
Helix 21
AC3
A
762 778Right-handed alpha
Helix 22
AC4
A
787 808Right-handed alpha
Helix 23
AC5
A
822 841Right-handed alpha
Helix 24
AC6
A
846 863Right-handed 310
Helix 25
AC7
A
864 879Right-handed alpha
Helix 26
AC8
A
881 903Right-handed alpha
Helix 27
AC9
A
903 910Right-handed alpha
Helix 28
AD1
A
927 939Right-handed alpha
Helix 29
AD2
A
943 955Right-handed alpha
Helix 30
AD3
A
955 986Right-handed alpha
Helix 31
AD4
A
1194 1206Right-handed alpha
Helix 32
AD5
A
1207 1224Right-handed alpha
Helix 33
AD6
A
1225 1228Right-handed 310
Helix 34
AD7
A
1231 1236Right-handed alpha
Helix 35
AD8
A
1238 1265Right-handed alpha
Helix 36
AD9
A
1265 1270Right-handed alpha
Helix 37
AE1
A
1272 1295Right-handed alpha
Helix 38
AE2
A
1301 1306Right-handed alpha
Helix 39
AE3
A
1307 1317Right-handed 310
Helix 40
AE4
A
1320 1331Right-handed alpha
Helix 41
AE5
A
1333 1359Right-handed alpha
Helix 42
AE6
A
1382 1391Right-handed alpha
Helix 43
AE7
A
1408 1421Right-handed alpha
Helix 44
AE8
A
1423 1433Right-handed alpha
Helix 45
AE9
A
1446 1448Right-handed 310
Helix 46
AF1
A
1449 1460Right-handed alpha
Helix 47
AF2
A
1462 1483Right-handed alpha
Helix 48
AF3
A
1491 1497Right-handed alpha
Helix 49
AF4
A
1500 1506Right-handed alpha
Helix 50
AF5
A
1519 1529Right-handed alpha
Helix 51
AF6
A
1530 1550Right-handed alpha
Helix 52
AF7
A
1556 1585Right-handed alpha
Helix 53
AF8
A
1592 1616Right-handed alpha
Helix 54
AF9
A
1621 1629Right-handed alpha
Helix 55
AG1
A
1630 1634Right-handed 310
Helix 56
AG2
A
1635 1642Right-handed 310
Helix 57
AG3
A
1645 1655Right-handed alpha
Helix 58
AG4
A
1656 1682Right-handed alpha
Helix 59
AG5
A
1699 1711Right-handed alpha
Helix 60
AG6
A
1715 1721Right-handed alpha
Helix 61
AG7
A
1748 1785Right-handed alpha
Helix 62
AG8
D
6 13Right-handed alpha
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There are 5 sheets in PDB entry 6J8E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
32 33first strand
Strand 2
C
51 52anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
37 41first strand
Strand 2
C
138 147parallel
Strand 3
C
123 130anti-parallel
Strand 4
C
64 70anti-parallel
Strand 5
C
77 84anti-parallel
Strand 6
C
87 89anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
46 48first strand
Strand 2
C
112 114anti-parallel
Strand 3
C
99 101anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
276 280first strand
Strand 2
A
351 355anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1365 1367first strand
Strand 2
A
1397 1399anti-parallel
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