Analysis of interatomic Contacts of Structural Units in PDB entry:
6J8H


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6J8H entry

There are 3 chains in PDB entry 6J8H (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
SER 29MET 148
A
PRO 114GLU 1768
B
GLY 20ALA 192
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 62 helices in PDB entry 6J8H. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
C
92 96Right-handed 310
Helix 2
AA2
C
104 108Right-handed 310
Helix 3
AA3
C
118 122Right-handed 310
Helix 4
AA4
A
115 124Right-handed alpha
Helix 5
AA5
A
125 144Right-handed alpha
Helix 6
AA6
A
151 176Right-handed alpha
Helix 7
AA7
A
180 186Right-handed alpha
Helix 8
AA8
A
186 204Right-handed alpha
Helix 9
AA9
A
209 215Right-handed alpha
Helix 10
AB1
A
218 228Right-handed alpha
Helix 11
AB2
A
230 245Right-handed alpha
Helix 12
AB3
A
245 268Right-handed alpha
Helix 13
AB4
A
269 271Right-handed 310
Helix 14
AB5
A
280 284Right-handed 310
Helix 15
AB6
A
285 293Right-handed alpha
Helix 16
AB7
A
295 303Right-handed alpha
Helix 17
AB8
A
346 359Right-handed alpha
Helix 18
AB9
A
362 375Right-handed alpha
Helix 19
AC1
A
378 390Right-handed alpha
Helix 20
AC2
A
390 417Right-handed alpha
Helix 21
AC3
A
727 740Right-handed alpha
Helix 22
AC4
A
745 762Right-handed alpha
Helix 23
AC5
A
769 799Right-handed alpha
Helix 24
AC6
A
799 806Right-handed alpha
Helix 25
AC7
A
806 823Right-handed alpha
Helix 26
AC8
A
832 837Right-handed alpha
Helix 27
AC9
A
838 847Right-handed 310
Helix 28
AD1
A
849 864Right-handed alpha
Helix 29
AD2
A
866 896Right-handed alpha
Helix 30
AD3
A
912 925Right-handed alpha
Helix 31
AD4
A
927 940Right-handed alpha
Helix 32
AD5
A
940 972Right-handed alpha
Helix 33
AD6
A
1176 1191Right-handed alpha
Helix 34
AD7
A
1191 1212Right-handed alpha
Helix 35
AD8
A
1213 1218Right-handed 310
Helix 36
AD9
A
1219 1255Right-handed alpha
Helix 37
AE1
A
1256 1279Right-handed alpha
Helix 38
AE2
A
1286 1291Right-handed alpha
Helix 39
AE3
A
1292 1298Right-handed 310
Helix 40
AE4
A
1299 1304Right-handed alpha
Helix 41
AE5
A
1304 1344Right-handed alpha
Helix 42
AE6
A
1366 1377Right-handed alpha
Helix 43
AE7
A
1391 1405Right-handed alpha
Helix 44
AE8
A
1407 1418Right-handed alpha
Helix 45
AE9
A
1433 1445Right-handed alpha
Helix 46
AF1
A
1445 1467Right-handed alpha
Helix 47
AF2
A
1475 1488Right-handed alpha
Helix 48
AF3
A
1502 1514Right-handed alpha
Helix 49
AF4
A
1514 1534Right-handed alpha
Helix 50
AF5
A
1540 1570Right-handed alpha
Helix 51
AF6
A
1570 1576Right-handed alpha
Helix 52
AF7
A
1576 1603Right-handed alpha
Helix 53
AF8
A
1605 1614Right-handed alpha
Helix 54
AF9
A
1616 1621Right-handed alpha
Helix 55
AG1
A
1622 1627Right-handed alpha
Helix 56
AG2
A
1627 1640Right-handed alpha
Helix 57
AG3
A
1640 1667Right-handed alpha
Helix 58
AG4
A
1683 1696Right-handed alpha
Helix 59
AG5
A
1699 1709Right-handed alpha
Helix 60
AG6
A
1732 1768Right-handed alpha
Helix 61
AG7
B
83 87Right-handed 310
Helix 62
AG8
B
153 192Right-handed alpha
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There are 7 sheets in PDB entry 6J8H. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
31 33first strand
Strand 2
C
51 53anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
37 40first strand
Strand 2
C
137 146parallel
Strand 3
C
123 130anti-parallel
Strand 4
C
64 70anti-parallel
Strand 5
C
78 84anti-parallel
Strand 6
C
87 89anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
46 48first strand
Strand 2
C
112 114anti-parallel
Strand 3
C
99 101anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
273 277first strand
Strand 2
A
328 332anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1357 1358first strand
Strand 2
A
1349 1352anti-parallel
Strand 3
A
1380 1383anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
29 31first strand
Strand 2
B
133 147parallel
Strand 3
B
117 128anti-parallel
Strand 4
B
50 61anti-parallel
Strand 5
B
68 73anti-parallel
Strand 6
B
78 80anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
36 41first strand
Strand 2
B
103 108anti-parallel
Strand 3
B
90 92anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il