Analysis of interatomic Contacts of Structural Units in PDB entry:
6J9E

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6J9E entry

There are 10 chains in PDB entry 6J9E (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 11	GLY 231
B	LEU 9	PHE 230
C	SER 3	GLU 1382
D	MET 1	ARG 1371
E	VAL 6	ALA 76
G	G 1	C 29
H	G 1	C 29
I	A 9	A 20
J	ASN 2	LEU 67
F	MET 1	LEU 212

There are103 helices in PDB entry 6J9E. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	35	50	Right-handed alpha
Helix 2	AA2	A	77	88	Right-handed alpha
Helix 3	AA3	A	211	227	Right-handed alpha
Helix 4	AA4	B	34	50	Right-handed alpha
Helix 5	AA5	B	77	87	Right-handed alpha
Helix 6	AA6	B	211	230	Right-handed alpha
Helix 7	AA7	C	5	11	Right-handed alpha
Helix 8	AA8	C	29	41	Right-handed alpha
Helix 9	AA9	C	53	62	Right-handed alpha
Helix 10	AB1	C	86	94	Right-handed alpha
Helix 11	AB2	C	211	219	Right-handed alpha
Helix 12	AB3	C	221	230	Right-handed alpha
Helix 13	AB4	C	250	254	Right-handed 310
Helix 14	AB5	C	278	287	Right-handed alpha
Helix 15	AB6	C	324	335	Right-handed alpha
Helix 16	AB7	C	351	360	Right-handed alpha
Helix 17	AB8	C	364	377	Right-handed alpha
Helix 18	AB9	C	383	396	Right-handed alpha
Helix 19	AC1	C	404	416	Right-handed alpha
Helix 20	AC2	C	437	448	Right-handed alpha
Helix 21	AC3	C	451	466	Right-handed alpha
Helix 22	AC4	C	483	507	Right-handed alpha
Helix 23	AC5	C	516	520	Right-handed 310
Helix 24	AC6	C	522	536	Right-handed alpha
Helix 25	AC7	C	547	556	Right-handed alpha
Helix 26	AC8	C	572	577	Right-handed alpha
Helix 27	AC9	C	579	583	Right-handed 310
Helix 28	AD1	C	684	688	Right-handed 310
Helix 29	AD2	C	698	702	Right-handed 310
Helix 30	AD3	C	703	714	Right-handed alpha
Helix 31	AD4	C	715	717	Right-handed 310
Helix 32	AD5	C	732	741	Right-handed alpha
Helix 33	AD6	C	849	854	Right-handed alpha
Helix 34	AD7	C	887	891	Right-handed 310
Helix 35	AD8	C	926	935	Right-handed alpha
Helix 36	AD9	C	971	1008	Right-handed alpha
Helix 37	AE1	C	1053	1078	Right-handed alpha
Helix 38	AE2	C	1122	1126	Right-handed 310
Helix 39	AE3	C	1142	1148	Right-handed alpha
Helix 40	AE4	C	1150	1175	Right-handed alpha
Helix 41	AE5	C	1178	1191	Right-handed alpha
Helix 42	AE6	C	1208	1218	Right-handed alpha
Helix 43	AE7	C	1233	1244	Right-handed alpha
Helix 44	AE8	C	1280	1285	Right-handed alpha
Helix 45	AE9	C	1304	1308	Right-handed 310
Helix 46	AF1	C	1313	1323	Right-handed alpha
Helix 47	AF2	C	1325	1334	Right-handed alpha
Helix 48	AF3	C	1339	1353	Right-handed alpha
Helix 49	AF4	C	1362	1374	Right-handed alpha
Helix 50	AF5	D	5	9	Right-handed 310
Helix 51	AF6	D	26	34	Right-handed alpha
Helix 52	AF7	D	94	99	Right-handed 310
Helix 53	AF8	D	122	128	Right-handed alpha
Helix 54	AF9	D	131	140	Right-handed alpha
Helix 55	AG1	D	161	173	Right-handed alpha
Helix 56	AG2	D	181	191	Right-handed alpha
Helix 57	AG3	D	195	206	Right-handed alpha
Helix 58	AG4	D	211	230	Right-handed alpha
Helix 59	AG5	D	233	236	Right-handed 310
Helix 60	AG6	D	264	285	Right-handed alpha
Helix 61	AG7	D	288	308	Right-handed alpha
Helix 62	AG8	D	370	377	Right-handed alpha
Helix 63	AG9	D	377	389	Right-handed alpha
Helix 64	AH1	D	393	404	Right-handed alpha
Helix 65	AH2	D	405	416	Right-handed alpha
Helix 66	AH3	D	417	419	Right-handed 310
Helix 67	AH4	D	430	432	Right-handed 310
Helix 68	AH5	D	453	458	Right-handed alpha
Helix 69	AH6	D	473	484	Right-handed alpha
Helix 70	AH7	D	503	515	Right-handed alpha
Helix 71	AH8	D	529	539	Right-handed alpha
Helix 72	AH9	D	575	581	Right-handed alpha
Helix 73	AI1	D	598	613	Right-handed alpha
Helix 74	AI2	D	615	635	Right-handed alpha
Helix 75	AI3	D	648	671	Right-handed alpha
Helix 76	AI4	D	675	704	Right-handed alpha
Helix 77	AI5	D	721	730	Right-handed alpha
Helix 78	AI6	D	734	739	Right-handed alpha
Helix 79	AI7	D	769	805	Right-handed alpha
Helix 80	AI8	D	835	840	Right-handed alpha
Helix 81	AI9	D	867	878	Right-handed alpha
Helix 82	AJ1	D	897	902	Right-handed alpha
Helix 83	AJ2	D	918	926	Right-handed alpha
Helix 84	AJ3	D	927	931	Right-handed 310
Helix 85	AJ4	D	1140	1149	Right-handed alpha
Helix 86	AJ5	D	1217	1225	Right-handed alpha
Helix 87	AJ6	D	1227	1246	Right-handed alpha
Helix 88	AJ7	D	1250	1262	Right-handed alpha
Helix 89	AJ8	D	1281	1294	Right-handed alpha
Helix 90	AJ9	D	1309	1314	Right-handed alpha
Helix 91	AK1	D	1319	1324	Right-handed alpha
Helix 92	AK2	D	1328	1340	Right-handed alpha
Helix 93	AK3	D	1348	1355	Right-handed alpha
Helix 94	AK4	D	1363	1371	Right-handed alpha
Helix 95	AK5	E	8	13	Right-handed alpha
Helix 96	AK6	E	15	32	Right-handed alpha
Helix 97	AK7	E	46	57	Right-handed alpha
Helix 98	AK8	E	61	76	Right-handed alpha
Helix 99	AK9	J	46	61	Right-handed alpha
Helix 100	AL1	F	2	10	Right-handed alpha
Helix 101	AL2	F	20	39	Right-handed alpha
Helix 102	AL3	F	107	136	Right-handed alpha
Helix 103	AL4	F	205	212	Right-handed alpha

There are 45 sheets in PDB entry 6J9E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	15	17	first strand
Strand 2	A	23	31	anti-parallel
Strand 3	A	198	206	anti-parallel
Strand 4	A	179	188	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	61	first strand
Strand 2	A	139	148	anti-parallel
Strand 3	A	97	104	anti-parallel
Strand 4	A	115	116	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	90	92	first strand
Strand 2	A	121	123	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	108	111	first strand
Strand 2	A	129	133	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	150	152	first strand
Strand 2	A	174	176	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	15	17	first strand
Strand 2	B	23	27	anti-parallel
Strand 3	B	198	206	anti-parallel
Strand 4	B	179	188	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	61	first strand
Strand 2	B	141	148	anti-parallel
Strand 3	B	98	102	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	90	92	first strand
Strand 2	B	121	123	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	151	152	first strand
Strand 2	B	174	175	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	14	15	first strand
Strand 2	C	1224	1225	parallel
Strand 3	C	728	729	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	72	80	first strand
Strand 2	C	98	109	anti-parallel
Strand 3	C	120	133	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	141	143	first strand
Strand 2	C	146	150	anti-parallel
Strand 3	C	540	542	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	479	482	first strand
Strand 2	C	152	156	anti-parallel
Strand 3	C	558	559	parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	159	165	first strand
Strand 2	C	176	182	anti-parallel
Strand 3	C	189	192	anti-parallel
Strand 4	C	200	203	anti-parallel
Strand 5	C	209	210	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	235	236	first strand
Strand 2	C	244	245	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	307	308	first strand
Strand 2	C	315	317	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	586	587	first strand
Strand 2	C	602	603	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	608	609	first strand
Strand 2	C	615	622	anti-parallel
Strand 3	C	627	635	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	608	609	first strand
Strand 2	C	615	622	anti-parallel
Strand 3	C	680	681	anti-parallel
Strand 4	C	644	645	parallel
Strand 5	C	662	665	anti-parallel
Strand 6	C	670	673	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	744	745	first strand
Strand 2	C	811	814	anti-parallel
Strand 3	C	797	798	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	750	755	first strand
Strand 2	C	759	764	anti-parallel
Strand 3	C	779	781	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	786	787	first strand
Strand 2	C	793	794	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1137	1139	first strand
Strand 2	C	827	833	parallel
Strand 3	C	1267	1274	anti-parallel
Strand 4	C	1251	1252	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	844	847	first strand
Strand 2	C	1116	1120	parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	859	870	first strand
Strand 2	C	1087	1099	anti-parallel
Strand 3	C	956	964	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	911	913	first strand
Strand 2	C	947	948	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	916	917	first strand
Strand 2	C	943	944	anti-parallel

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There are 6 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1286	1288	first strand
Strand 2	D	350	357	anti-parallel
Strand 3	D	465	469	anti-parallel
Strand 4	D	421	425	anti-parallel
Strand 5	D	434	442	anti-parallel
Strand 6	D	365	369	parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1286	1288	first strand
Strand 2	D	350	357	anti-parallel
Strand 3	D	447	449	parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1310	1312	first strand
Strand 2	D	345	347	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1377	1381	first strand
Strand 2	D	20	24	anti-parallel
Strand 3	D	1342	1343	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	104	112	first strand
Strand 2	D	238	243	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	159	160	first strand
Strand 2	D	144	146	anti-parallel
Strand 3	D	178	179	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	547	556	first strand
Strand 2	D	565	574	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	707	710	first strand
Strand 2	D	713	716	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	821	823	first strand
Strand 2	D	882	884	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	826	827	first strand
Strand 2	D	832	834	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	952	953	first strand
Strand 2	D	1018	1020	anti-parallel

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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	959	960	first strand
Strand 2	D	982	987	anti-parallel
Strand 3	D	996	999	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1187	1192	first strand
Strand 2	D	1174	1180	anti-parallel
Strand 3	D	1163	1165	anti-parallel
Strand 4	D	1204	1205	anti-parallel

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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1278	1280	first strand
Strand 2	D	1264	1267	anti-parallel
Strand 3	D	1303	1305	anti-parallel

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There are 3 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	14	17	first strand
Strand 2	J	21	27	anti-parallel
Strand 3	J	33	40	anti-parallel

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There are 3 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	48	49	first strand
Strand 2	F	58	61	anti-parallel
Strand 3	F	100	101	anti-parallel

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There are 3 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	145	150	first strand
Strand 2	F	153	157	anti-parallel
Strand 3	F	163	165	anti-parallel

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There are 2 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	190	191	first strand
Strand 2	F	198	199	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6J9E

Analysis of interatomic Contacts of Structural Units in PDB entry:
6J9E