Analysis of interatomic Contacts of Structural Units in PDB entry:
6JMQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6JMQ entry

There are 4 chains in PDB entry 6JMQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 50	ASN 480
B	ARG 180	ALA 630
C	GLN 1	ASP 219
D	ASP 1	GLU 219

There are 45 helices in PDB entry 6JMQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	51	64	Right-handed alpha
Helix 2	AA2	A	65	69	Right-handed 310
Helix 3	AA3	A	70	78	Right-handed alpha
Helix 4	AA4	A	81	113	Right-handed alpha
Helix 5	AA5	A	118	126	Right-handed alpha
Helix 6	AA6	A	129	139	Right-handed alpha
Helix 7	AA7	A	140	158	Right-handed alpha
Helix 8	AA8	A	167	189	Right-handed alpha
Helix 9	AA9	A	189	201	Right-handed alpha
Helix 10	AB1	A	202	216	Right-handed alpha
Helix 11	AB2	A	239	244	Right-handed alpha
Helix 12	AB3	A	244	254	Right-handed alpha
Helix 13	AB4	A	256	259	Right-handed 310
Helix 14	AB5	A	260	265	Right-handed alpha
Helix 15	AB6	A	272	280	Right-handed alpha
Helix 16	AB7	A	282	292	Right-handed alpha
Helix 17	AB8	A	293	298	Right-handed alpha
Helix 18	AB9	A	310	317	Right-handed alpha
Helix 19	AC1	A	322	331	Right-handed alpha
Helix 20	AC2	A	333	352	Right-handed alpha
Helix 21	AC3	A	373	386	Right-handed alpha
Helix 22	AC4	A	387	390	Right-handed 310
Helix 23	AC5	A	392	418	Right-handed alpha
Helix 24	AC6	A	433	454	Right-handed alpha
Helix 25	AC7	A	454	466	Right-handed alpha
Helix 26	AC8	A	467	478	Right-handed alpha
Helix 27	AC9	B	181	207	Right-handed alpha
Helix 28	AD1	B	229	235	Right-handed alpha
Helix 29	AD2	B	241	246	Right-handed 310
Helix 30	AD3	B	247	252	Right-handed alpha
Helix 31	AD4	B	286	299	Right-handed alpha
Helix 32	AD5	B	322	337	Right-handed alpha
Helix 33	AD6	B	355	371	Right-handed alpha
Helix 34	AD7	B	384	389	Right-handed alpha
Helix 35	AD8	B	414	426	Right-handed alpha
Helix 36	AD9	B	446	448	Right-handed 310
Helix 37	AE1	B	449	460	Right-handed alpha
Helix 38	AE2	B	508	514	Right-handed alpha
Helix 39	AE3	B	519	533	Right-handed alpha
Helix 40	AE4	B	534	539	Right-handed alpha
Helix 41	AE5	C	28	32	Right-handed 310
Helix 42	AE6	C	60	64	Right-handed 310
Helix 43	AE7	C	86	90	Right-handed 310
Helix 44	AE8	D	127	134	Right-handed alpha
Helix 45	AE9	D	188	194	Right-handed alpha

There are 15 sheets in PDB entry 6JMQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	224	226	first strand
Strand 2	B	465	467	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	258	259	first strand
Strand 2	B	303	304	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	265	267	first strand
Strand 2	B	275	280	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	306	307	first strand
Strand 2	B	345	346	parallel
Strand 3	B	376	379	parallel
Strand 4	B	399	401	parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	540	543	first strand
Strand 2	B	550	556	anti-parallel
Strand 3	B	562	568	anti-parallel
Strand 4	B	621	626	anti-parallel
Strand 5	B	592	598	anti-parallel
Strand 6	B	608	610	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	4	first strand
Strand 2	C	24	25	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	12	first strand
Strand 2	C	113	116	parallel
Strand 3	C	91	95	anti-parallel
Strand 4	C	36	39	anti-parallel
Strand 5	C	46	49	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	18	21	first strand
Strand 2	C	77	82	anti-parallel
Strand 3	C	67	72	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	125	129	first strand
Strand 2	C	140	150	anti-parallel
Strand 3	C	179	189	anti-parallel
Strand 4	C	169	170	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	125	129	first strand
Strand 2	C	140	150	anti-parallel
Strand 3	C	179	189	anti-parallel
Strand 4	C	174	176	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	158	159	first strand
Strand 2	C	199	201	anti-parallel
Strand 3	C	212	214	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	6	first strand
Strand 2	D	20	25	anti-parallel
Strand 3	D	76	81	anti-parallel
Strand 4	D	68	71	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	13	first strand
Strand 2	D	108	112	parallel
Strand 3	D	91	92	anti-parallel
Strand 4	D	41	44	anti-parallel
Strand 5	D	51	55	anti-parallel
Strand 6	D	59	60	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	120	124	first strand
Strand 2	D	136	145	anti-parallel
Strand 3	D	179	187	anti-parallel
Strand 4	D	165	169	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	159	161	first strand
Strand 2	D	152	156	anti-parallel
Strand 3	D	197	202	anti-parallel
Strand 4	D	211	216	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6JMQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
6JMQ