Analysis of interatomic Contacts of Structural Units in PDB entry:
6JNX

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6JNX entry

There are 11 chains in PDB entry 6JNX (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 8	VAL 232
B	VAL 5	ASP 233
C	VAL 2	ASP 1341
D	GLU 16	ARG 1373
E	ALA 2	LEU 80
F	GLU 90	ALA 447
N	C 3	A 65
R	A 5	A 22
T	T -3	G 59
P	ASN 7	LYS 153
Q	ASN 7	VAL 144

There are127 helices in PDB entry 6JNX. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	34	50	Right-handed alpha
Helix 2	AA2	A	77	87	Right-handed alpha
Helix 3	AA3	A	111	115	Right-handed 310
Helix 4	AA4	A	212	229	Right-handed alpha
Helix 5	AA5	B	34	50	Right-handed alpha
Helix 6	AA6	B	77	87	Right-handed alpha
Helix 7	AA7	B	113	115	Right-handed 310
Helix 8	AA8	B	212	228	Right-handed alpha
Helix 9	AA9	B	229	232	Right-handed 310
Helix 10	AB1	C	6	10	Right-handed 310
Helix 11	AB2	C	28	39	Right-handed alpha
Helix 12	AB3	C	48	57	Right-handed alpha
Helix 13	AB4	C	81	89	Right-handed alpha
Helix 14	AB5	C	206	213	Right-handed alpha
Helix 15	AB6	C	216	224	Right-handed alpha
Helix 16	AB7	C	242	247	Right-handed 310
Helix 17	AB8	C	270	281	Right-handed alpha
Helix 18	AB9	C	289	294	Right-handed alpha
Helix 19	AC1	C	318	327	Right-handed alpha
Helix 20	AC2	C	345	354	Right-handed alpha
Helix 21	AC3	C	358	371	Right-handed alpha
Helix 22	AC4	C	377	390	Right-handed alpha
Helix 23	AC5	C	398	409	Right-handed alpha
Helix 24	AC6	C	421	438	Right-handed alpha
Helix 25	AC7	C	455	481	Right-handed alpha
Helix 26	AC8	C	494	508	Right-handed alpha
Helix 27	AC9	C	519	528	Right-handed alpha
Helix 28	AD1	C	544	549	Right-handed alpha
Helix 29	AD2	C	662	667	Right-handed alpha
Helix 30	AD3	C	670	674	Right-handed 310
Helix 31	AD4	C	675	688	Right-handed alpha
Helix 32	AD5	C	704	712	Right-handed alpha
Helix 33	AD6	C	820	826	Right-handed alpha
Helix 34	AD7	C	858	863	Right-handed alpha
Helix 35	AD8	C	896	907	Right-handed alpha
Helix 36	AD9	C	942	977	Right-handed alpha
Helix 37	AE1	C	993	998	Right-handed 310
Helix 38	AE2	C	1005	1038	Right-handed alpha
Helix 39	AE3	C	1081	1084	Right-handed 310
Helix 40	AE4	C	1101	1106	Right-handed alpha
Helix 41	AE5	C	1109	1134	Right-handed alpha
Helix 42	AE6	C	1137	1151	Right-handed alpha
Helix 43	AE7	C	1167	1177	Right-handed alpha
Helix 44	AE8	C	1191	1202	Right-handed alpha
Helix 45	AE9	C	1238	1242	Right-handed 310
Helix 46	AF1	C	1271	1281	Right-handed alpha
Helix 47	AF2	C	1283	1293	Right-handed alpha
Helix 48	AF3	C	1297	1309	Right-handed alpha
Helix 49	AF4	C	1320	1333	Right-handed alpha
Helix 50	AF5	D	26	33	Right-handed alpha
Helix 51	AF6	D	58	63	Right-handed alpha
Helix 52	AF7	D	77	81	Right-handed 310
Helix 53	AF8	D	94	100	Right-handed 310
Helix 54	AF9	D	113	118	Right-handed alpha
Helix 55	AG1	D	122	129	Right-handed alpha
Helix 56	AG2	D	131	140	Right-handed alpha
Helix 57	AG3	D	163	172	Right-handed alpha
Helix 58	AG4	D	180	191	Right-handed alpha
Helix 59	AG5	D	194	208	Right-handed alpha
Helix 60	AG6	D	210	230	Right-handed alpha
Helix 61	AG7	D	233	236	Right-handed 310
Helix 62	AG8	D	246	250	Right-handed 310
Helix 63	AG9	D	263	286	Right-handed alpha
Helix 64	AH1	D	288	308	Right-handed alpha
Helix 65	AH2	D	336	342	Right-handed alpha
Helix 66	AH3	D	370	377	Right-handed alpha
Helix 67	AH4	D	377	388	Right-handed alpha
Helix 68	AH5	D	393	404	Right-handed alpha
Helix 69	AH6	D	406	416	Right-handed alpha
Helix 70	AH7	D	430	432	Right-handed 310
Helix 71	AH8	D	452	458	Right-handed alpha
Helix 72	AH9	D	473	483	Right-handed alpha
Helix 73	AI1	D	505	514	Right-handed alpha
Helix 74	AI2	D	529	539	Right-handed alpha
Helix 75	AI3	D	574	580	Right-handed alpha
Helix 76	AI4	D	588	592	Right-handed 310
Helix 77	AI5	D	597	613	Right-handed alpha
Helix 78	AI6	D	614	636	Right-handed alpha
Helix 79	AI7	D	649	670	Right-handed alpha
Helix 80	AI8	D	674	702	Right-handed alpha
Helix 81	AI9	D	720	728	Right-handed alpha
Helix 82	AJ1	D	733	741	Right-handed alpha
Helix 83	AJ2	D	769	805	Right-handed alpha
Helix 84	AJ3	D	835	840	Right-handed alpha
Helix 85	AJ4	D	865	875	Right-handed alpha
Helix 86	AJ5	D	897	899	Right-handed 310
Helix 87	AJ6	D	914	925	Right-handed alpha
Helix 88	AJ7	D	926	928	Right-handed 310
Helix 89	AJ8	D	1137	1147	Right-handed alpha
Helix 90	AJ9	D	1216	1225	Right-handed alpha
Helix 91	AK1	D	1225	1245	Right-handed alpha
Helix 92	AK2	D	1250	1261	Right-handed alpha
Helix 93	AK3	D	1282	1293	Right-handed alpha
Helix 94	AK4	D	1308	1313	Right-handed alpha
Helix 95	AK5	D	1318	1325	Right-handed alpha
Helix 96	AK6	D	1327	1339	Right-handed alpha
Helix 97	AK7	D	1349	1354	Right-handed alpha
Helix 98	AK8	D	1360	1373	Right-handed alpha
Helix 99	AK9	E	6	13	Right-handed alpha
Helix 100	AL1	E	17	32	Right-handed alpha
Helix 101	AL2	E	45	56	Right-handed alpha
Helix 102	AL3	E	60	78	Right-handed alpha
Helix 103	AL4	F	96	106	Right-handed alpha
Helix 104	AL5	F	112	136	Right-handed alpha
Helix 105	AL6	F	137	153	Right-handed alpha
Helix 106	AL7	F	214	234	Right-handed alpha
Helix 107	AL8	F	244	258	Right-handed alpha
Helix 108	AL9	F	262	292	Right-handed alpha
Helix 109	AM1	F	298	306	Right-handed alpha
Helix 110	AM2	F	313	321	Right-handed alpha
Helix 111	AM3	F	324	330	Right-handed alpha
Helix 112	AM4	F	333	352	Right-handed alpha
Helix 113	AM5	F	354	392	Right-handed alpha
Helix 114	AM6	F	400	418	Right-handed alpha
Helix 115	AM7	F	426	446	Right-handed alpha
Helix 116	AM8	P	9	29	Right-handed alpha
Helix 117	AM9	P	39	46	Right-handed alpha
Helix 118	AN1	P	59	75	Right-handed alpha
Helix 119	AN2	P	77	89	Right-handed alpha
Helix 120	AN3	P	93	104	Right-handed alpha
Helix 121	AN4	P	122	153	Right-handed alpha
Helix 122	AN5	Q	9	29	Right-handed alpha
Helix 123	AN6	Q	37	45	Right-handed alpha
Helix 124	AN7	Q	61	74	Right-handed alpha
Helix 125	AN8	Q	78	88	Right-handed alpha
Helix 126	AN9	Q	93	104	Right-handed alpha
Helix 127	AO1	Q	122	142	Right-handed alpha

There are 54 sheets in PDB entry 6JNX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7, AF8, AF9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	12	17	first strand
Strand 2	A	25	29	anti-parallel
Strand 3	A	199	204	anti-parallel
Strand 4	A	184	189	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	56	61	first strand
Strand 2	A	139	147	anti-parallel
Strand 3	A	97	105	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	90	92	first strand
Strand 2	A	121	123	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	108	110	first strand
Strand 2	A	131	133	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	151	153	first strand
Strand 2	A	175	177	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	16	18	first strand
Strand 2	B	23	31	anti-parallel
Strand 3	B	195	207	anti-parallel
Strand 4	B	180	192	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	97	101	first strand
Strand 2	B	142	149	anti-parallel
Strand 3	B	53	61	anti-parallel
Strand 4	B	171	172	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	90	91	first strand
Strand 2	B	122	123	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	104	105	first strand
Strand 2	B	139	140	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	108	111	first strand
Strand 2	B	129	133	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	59	60	first strand
Strand 2	C	66	75	anti-parallel
Strand 3	C	93	105	anti-parallel
Strand 4	C	114	118	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	59	60	first strand
Strand 2	C	66	75	anti-parallel
Strand 3	C	93	105	anti-parallel
Strand 4	C	121	128	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	136	137	first strand
Strand 2	C	142	143	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	451	453	first strand
Strand 2	C	147	151	anti-parallel
Strand 3	C	530	531	parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	154	158	first strand
Strand 2	C	173	177	anti-parallel
Strand 3	C	184	187	anti-parallel
Strand 4	C	195	197	anti-parallel
Strand 5	C	204	205	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	227	231	first strand
Strand 2	C	332	336	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	239	240	first strand
Strand 2	C	284	285	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	255	257	first strand
Strand 2	C	260	263	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	301	302	first strand
Strand 2	C	309	311	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	580	581	first strand
Strand 2	C	587	594	anti-parallel
Strand 3	C	599	606	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	580	581	first strand
Strand 2	C	587	594	anti-parallel
Strand 3	C	652	653	anti-parallel
Strand 4	C	616	617	parallel
Strand 5	C	634	637	anti-parallel
Strand 6	C	642	645	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	716	718	first strand
Strand 2	C	781	785	anti-parallel
Strand 3	C	768	769	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	749	752	first strand
Strand 2	C	731	736	anti-parallel
Strand 3	C	722	727	anti-parallel
Strand 4	C	776	777	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	757	758	first strand
Strand 2	C	764	765	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	789	790	first strand
Strand 2	C	793	794	anti-parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1066	1067	first strand
Strand 2	C	1225	1234	anti-parallel
Strand 3	C	798	804	anti-parallel
Strand 4	C	1096	1098	parallel
Strand 5	C	816	819	anti-parallel
Strand 6	C	1076	1080	parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1066	1067	first strand
Strand 2	C	1225	1234	anti-parallel
Strand 3	C	1209	1210	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	830	838	first strand
Strand 2	C	1048	1058	anti-parallel
Strand 3	C	926	935	anti-parallel
Strand 4	C	876	877	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	882	884	first strand
Strand 2	C	918	919	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1086	1087	first strand
Strand 2	C	1213	1214	anti-parallel

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There are 5 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1244	1246	first strand
Strand 2	D	350	356	anti-parallel
Strand 3	D	465	469	anti-parallel
Strand 4	D	421	424	anti-parallel
Strand 5	D	434	437	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1244	1246	first strand
Strand 2	D	350	356	anti-parallel
Strand 3	D	447	448	parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1268	1270	first strand
Strand 2	D	345	347	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1335	1339	first strand
Strand 2	D	20	24	anti-parallel
Strand 3	D	1341	1342	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	34	37	first strand
Strand 2	D	102	112	parallel
Strand 3	D	238	244	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	144	145	first strand
Strand 2	D	159	160	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	253	254	first strand
Strand 2	D	260	261	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	366	369	first strand
Strand 2	D	439	442	parallel

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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	526	527	first strand
Strand 2	D	548	550	parallel
Strand 3	D	571	572	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	552	554	first strand
Strand 2	D	566	568	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	706	707	first strand
Strand 2	D	714	715	anti-parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	809	811	first strand
Strand 2	D	894	895	parallel

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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	820	822	first strand
Strand 2	D	880	882	anti-parallel

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There are 2 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	825	826	first strand
Strand 2	D	831	833	anti-parallel

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There are 2 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	848	849	first strand
Strand 2	D	856	858	anti-parallel

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There are 3 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	957	961	first strand
Strand 2	D	980	985	anti-parallel
Strand 3	D	991	997	anti-parallel

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There are 2 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	965	967	first strand
Strand 2	D	973	975	anti-parallel

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There are 2 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1025	1026	first strand
Strand 2	D	1123	1124	anti-parallel

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There are 3 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1077	1081	first strand
Strand 2	D	1033	1038	anti-parallel
Strand 3	D	1114	1115	anti-parallel

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There are 3 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1046	1049	first strand
Strand 2	D	1058	1061	anti-parallel
Strand 3	D	1105	1107	anti-parallel

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There are 3 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1162	1165	first strand
Strand 2	D	1173	1178	anti-parallel
Strand 3	D	1189	1190	anti-parallel

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There are 3 strands in AF7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1279	1281	first strand
Strand 2	D	1263	1268	anti-parallel
Strand 3	D	1301	1304	anti-parallel

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There are 2 strands in AF8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	162	165	first strand
Strand 2	F	259	261	anti-parallel

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There are 2 strands in AF9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	108	109	first strand
Strand 2	Q	118	119	anti-parallel

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Analysis of interatomic Contacts of Structural Units in PDB entry: 6JNX

Analysis of interatomic Contacts of Structural Units in PDB entry:
6JNX