Analysis of interatomic Contacts of Structural Units in PDB entry:
6JXR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6JXR entry

There are 8 chains in PDB entry 6JXR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
a	GLN 22	ARG 57
b	PHE 24	PHE 55
d	PHE 22	GLU 129
f	GLN 33	LYS 156
g	SER 24	GLY 138
m	VAL 26	SER 273
n	GLY 22	LYS 308
e	GLN 33	ARG 155

There are 15 helices in PDB entry 6JXR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	a	28	57	Right-handed alpha
Helix 2	AA2	b	27	54	Right-handed alpha
Helix 3	AA3	d	100	128	Right-handed alpha
Helix 4	AA4	f	104	108	Right-handed 310
Helix 5	AA5	f	128	155	Right-handed alpha
Helix 6	AA6	g	111	137	Right-handed alpha
Helix 7	AA7	m	102	106	Right-handed 310
Helix 8	AA8	m	204	208	Right-handed 310
Helix 9	AA9	m	228	233	Right-handed alpha
Helix 10	AB1	m	239	273	Right-handed alpha
Helix 11	AB2	n	101	105	Right-handed 310
Helix 12	AB3	n	150	157	Right-handed alpha
Helix 13	AB4	n	269	308	Right-handed alpha
Helix 14	AB5	e	104	108	Right-handed 310
Helix 15	AB6	e	126	154	Right-handed alpha

There are 16 sheets in PDB entry 6JXR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	26	27	first strand
Strand 2	d	32	36	anti-parallel
Strand 3	d	57	62	anti-parallel
Strand 4	d	50	51	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	42	46	first strand
Strand 2	d	69	74	anti-parallel
Strand 3	d	83	91	anti-parallel
Strand 4	e	110	116	parallel
Strand 5	e	94	100	anti-parallel
Strand 6	e	57	61	anti-parallel
Strand 7	e	65	66	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	96	98	first strand
Strand 2	e	122	124	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	f	37	41	first strand
Strand 2	f	44	48	anti-parallel
Strand 3	f	81	85	anti-parallel
Strand 4	f	75	77	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	f	65	66	first strand
Strand 2	f	57	60	anti-parallel
Strand 3	f	94	100	anti-parallel
Strand 4	f	111	116	anti-parallel
Strand 5	g	97	102	parallel
Strand 6	g	83	88	anti-parallel
Strand 7	g	53	57	anti-parallel
Strand 8	g	60	65	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	f	122	123	first strand
Strand 2	g	108	109	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	g	31	34	first strand
Strand 2	g	41	46	anti-parallel
Strand 3	g	72	76	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	m	27	28	first strand
Strand 2	m	41	46	anti-parallel
Strand 3	m	93	98	anti-parallel
Strand 4	m	83	88	anti-parallel
Strand 5	m	76	80	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	m	33	36	first strand
Strand 2	m	126	131	parallel
Strand 3	m	107	114	anti-parallel
Strand 4	m	54	60	anti-parallel
Strand 5	m	67	72	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	m	33	36	first strand
Strand 2	m	126	131	parallel
Strand 3	m	107	114	anti-parallel
Strand 4	m	121	122	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	m	140	143	first strand
Strand 2	m	153	158	anti-parallel
Strand 3	m	189	198	anti-parallel
Strand 4	m	180	184	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	n	23	26	first strand
Strand 2	n	38	44	anti-parallel
Strand 3	n	95	97	anti-parallel
Strand 4	n	84	85	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	n	29	33	first strand
Strand 2	n	128	133	parallel
Strand 3	n	106	110	anti-parallel
Strand 4	n	51	57	anti-parallel
Strand 5	n	61	68	anti-parallel
Strand 6	n	74	76	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	n	143	147	first strand
Strand 2	n	159	169	anti-parallel
Strand 3	n	207	216	anti-parallel
Strand 4	n	189	191	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	n	183	184	first strand
Strand 2	n	176	180	anti-parallel
Strand 3	n	226	233	anti-parallel
Strand 4	n	252	259	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	37	41	first strand
Strand 2	e	44	48	anti-parallel
Strand 3	e	81	85	anti-parallel
Strand 4	e	75	77	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6JXR

Analysis of interatomic Contacts of Structural Units in PDB entry:
6JXR