Analysis of interatomic Contacts of Structural Units in PDB entry:
6KC4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6KC4 entry

There are 18 chains in PDB entry 6KC4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
SER 452LYS 552
B
ASP 1GLU 2
B
GLU 4VAL 6
C
LYS 453LYS 552
D
ASP 1GLU 2
D
GLU 4ASP 7
E
SER 452LYS 552
F
ASP 1GLU 2
F
GLU 4VAL 6
G
SER 452LYS 552
H
ASP 1GLU 2
H
GLU 4VAL 6
I
LYS 453LYS 552
J
ASP 1GLU 2
J
GLU 4VAL 6
K
SER 452LYS 552
L
ASP 1GLU 2
L
GLU 4VAL 6
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 6KC4. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
454 458Right-handed 310
Helix 2
AA2
A
466 474Right-handed alpha
Helix 3
AA3
A
523 535Right-handed alpha
Helix 4
AA4
C
454 458Right-handed 310
Helix 5
AA5
C
466 474Right-handed alpha
Helix 6
AA6
C
523 535Right-handed alpha
Helix 7
AA7
E
454 458Right-handed 310
Helix 8
AA8
E
466 474Right-handed alpha
Helix 9
AA9
E
523 535Right-handed alpha
Helix 10
AB1
G
454 458Right-handed 310
Helix 11
AB2
G
466 474Right-handed alpha
Helix 12
AB3
G
523 535Right-handed alpha
Helix 13
AB4
I
454 458Right-handed 310
Helix 14
AB5
I
466 474Right-handed alpha
Helix 15
AB6
I
523 535Right-handed alpha
Helix 16
AB7
K
454 458Right-handed 310
Helix 17
AB8
K
466 474Right-handed alpha
Helix 18
AB9
K
523 535Right-handed alpha
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There are 6 sheets in PDB entry 6KC4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
513 515first strand
Strand 2
A
501 510anti-parallel
Strand 3
A
492 498anti-parallel
Strand 4
A
479 484anti-parallel
Strand 5
A
548 549parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
513 515first strand
Strand 2
C
501 510anti-parallel
Strand 3
C
492 498anti-parallel
Strand 4
C
479 484anti-parallel
Strand 5
C
548 549parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
513 515first strand
Strand 2
E
501 510anti-parallel
Strand 3
E
492 498anti-parallel
Strand 4
E
479 484anti-parallel
Strand 5
E
548 549parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
513 515first strand
Strand 2
G
501 510anti-parallel
Strand 3
G
492 498anti-parallel
Strand 4
G
479 484anti-parallel
Strand 5
G
548 549parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
513 515first strand
Strand 2
I
501 510anti-parallel
Strand 3
I
492 498anti-parallel
Strand 4
I
479 484anti-parallel
Strand 5
I
548 549parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
513 515first strand
Strand 2
K
501 510anti-parallel
Strand 3
K
492 498anti-parallel
Strand 4
K
479 484anti-parallel
Strand 5
K
548 549parallel
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