Analysis of interatomic Contacts of Structural Units in PDB entry:
6KI3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6KI3 entry

There are 8 chains in PDB entry 6KI3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -1LYS 296
C
 G 1 C 9
D
 C 11 G 17
E
 C 1 G 17
B
 SER -3LYS 296
F
 G 1 C 9
G
 C 11 G 17
H
 C 1 G 17
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 6KI3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 12Right-handed alpha
Helix 2
AA2
A
19 35Right-handed alpha
Helix 3
AA3
A
57 72Right-handed alpha
Helix 4
AA4
A
90 108Right-handed alpha
Helix 5
AA5
A
120 130Right-handed alpha
Helix 6
AA6
A
155 170Right-handed alpha
Helix 7
AA7
A
180 186Right-handed alpha
Helix 8
AA8
A
192 205Right-handed alpha
Helix 9
AA9
A
211 213Right-handed 310
Helix 10
AB1
A
242 246Right-handed 310
Helix 11
AB2
A
248 251Right-handed 310
Helix 12
AB3
A
252 265Right-handed alpha
Helix 13
AB4
A
276 296Right-handed alpha
Helix 14
AB5
B
7 12Right-handed alpha
Helix 15
AB6
B
19 35Right-handed alpha
Helix 16
AB7
B
57 72Right-handed alpha
Helix 17
AB8
B
89 108Right-handed alpha
Helix 18
AB9
B
120 130Right-handed alpha
Helix 19
AC1
B
155 169Right-handed alpha
Helix 20
AC2
B
180 186Right-handed alpha
Helix 21
AC3
B
192 205Right-handed alpha
Helix 22
AC4
B
211 213Right-handed 310
Helix 23
AC5
B
242 246Right-handed 310
Helix 24
AC6
B
248 251Right-handed 310
Helix 25
AC7
B
252 265Right-handed alpha
Helix 26
AC8
B
276 296Right-handed alpha
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There are 4 sheets in PDB entry 6KI3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1 5first strand
Strand 2
A
41 44parallel
Strand 3
A
74 78parallel
Strand 4
A
111 115parallel
Strand 5
A
138 142parallel
Strand 6
A
174 179parallel
Strand 7
A
215 218parallel
Strand 8
A
267 270parallel
Strand 9
A
1 5parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
221 222first strand
Strand 2
A
233 234anti-parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1 5first strand
Strand 2
B
41 44parallel
Strand 3
B
74 78parallel
Strand 4
B
111 115parallel
Strand 5
B
138 142parallel
Strand 6
B
174 179parallel
Strand 7
B
215 218parallel
Strand 8
B
267 270parallel
Strand 9
B
1 5parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
221 222first strand
Strand 2
B
233 234anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il