Analysis of interatomic Contacts of Structural Units in PDB entry:
6KIU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6KIU entry

There are 10 chains in PDB entry 6KIU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
PRO 38ARG 134
B
LEU 22GLY 101
C
ARG 11PRO 117
D
ARG 27SER 120
E
PRO 38ARG 134
F
ASP 24GLY 101
G
LYS 13PRO 117
H
LYS 28LYS 122
I
T 2 A 146
J
T 2 G 53
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 6KIU. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
44 57Right-handed alpha
Helix 2
AA2
A
63 76Right-handed alpha
Helix 3
AA3
A
86 114Right-handed alpha
Helix 4
AA4
A
120 131Right-handed alpha
Helix 5
AA5
B
32 42Right-handed alpha
Helix 6
AA6
B
49 76Right-handed alpha
Helix 7
AA7
B
82 94Right-handed alpha
Helix 8
AA8
C
16 22Right-handed alpha
Helix 9
AA9
C
27 36Right-handed alpha
Helix 10
AB1
C
46 73Right-handed alpha
Helix 11
AB2
C
79 90Right-handed alpha
Helix 12
AB3
C
90 97Right-handed alpha
Helix 13
AB4
C
112 116Right-handed 310
Helix 14
AB5
D
34 46Right-handed alpha
Helix 15
AB6
D
52 81Right-handed alpha
Helix 16
AB7
D
87 99Right-handed alpha
Helix 17
AB8
D
101 120Right-handed alpha
Helix 18
AB9
E
44 57Right-handed alpha
Helix 19
AC1
E
63 76Right-handed alpha
Helix 20
AC2
E
86 114Right-handed alpha
Helix 21
AC3
E
120 131Right-handed alpha
Helix 22
AC4
F
25 29Right-handed 310
Helix 23
AC5
F
30 42Right-handed alpha
Helix 24
AC6
F
49 76Right-handed alpha
Helix 25
AC7
F
82 94Right-handed alpha
Helix 26
AC8
G
16 22Right-handed alpha
Helix 27
AC9
G
27 37Right-handed alpha
Helix 28
AD1
G
46 73Right-handed alpha
Helix 29
AD2
G
79 90Right-handed alpha
Helix 30
AD3
G
91 97Right-handed alpha
Helix 31
AD4
G
112 116Right-handed 310
Helix 32
AD5
H
34 46Right-handed alpha
Helix 33
AD6
H
52 81Right-handed alpha
Helix 34
AD7
H
87 99Right-handed alpha
Helix 35
AD8
H
100 120Right-handed alpha
Helix 36
AD9
K
3815 3830Right-handed alpha
Helix 37
AE1
K
3866 3878Right-handed alpha
Helix 38
AE2
N
228 234Right-handed alpha
Helix 39
AE3
O
23 34Right-handed alpha
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There are 32 sheets in PDB entry 6KIU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
83 84first strand
Strand 2
B
80 81parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
96 98first strand
Strand 2
G
100 102parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
42 43first strand
Strand 2
D
85 86parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
101 102first strand
Strand 2
F
97 98parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
83 84first strand
Strand 2
F
80 81parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
118 119first strand
Strand 2
F
45 46parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
42 43first strand
Strand 2
H
85 86parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
77 78first strand
Strand 2
H
50 51parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
3831 3835first strand
Strand 2
K
3841 3845anti-parallel
Strand 3
K
3939 3942anti-parallel
Strand 4
K
3906 3907parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
3856 3857first strand
Strand 2
K
3923 3928anti-parallel
Strand 3
K
3915 3920anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
3884 3886first strand
Strand 2
K
3891 3894anti-parallel
Strand 3
K
3861 3864anti-parallel
Strand 4
N
343 344parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
3898 3899first strand
Strand 2
N
337 338parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
N
20 21first strand
Strand 2
N
317 320anti-parallel
Strand 3
N
311 314anti-parallel
Strand 4
N
300 301anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
N
31 32first strand
Strand 2
N
38 42anti-parallel
Strand 3
N
47 52anti-parallel
Strand 4
N
58 63anti-parallel
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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
N
69 74first strand
Strand 2
N
81 85anti-parallel
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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
N
110 112first strand
Strand 2
N
124 127anti-parallel
Strand 3
N
133 135anti-parallel
Strand 4
N
142 144anti-parallel
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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
N
156 159first strand
Strand 2
N
165 169anti-parallel
Strand 3
N
174 179anti-parallel
Strand 4
N
187 190anti-parallel
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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
N
201 206first strand
Strand 2
N
213 217anti-parallel
Strand 3
N
221 225anti-parallel
Strand 4
N
243 246anti-parallel
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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
N
254 259first strand
Strand 2
N
265 270anti-parallel
Strand 3
N
276 280anti-parallel
Strand 4
N
286 290anti-parallel
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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
R
36 42first strand
Strand 2
R
326 331anti-parallel
Strand 3
R
315 319anti-parallel
Strand 4
R
306 309anti-parallel
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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
R
69 72first strand
Strand 2
R
79 83anti-parallel
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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
R
90 93first strand
Strand 2
R
101 106anti-parallel
Strand 3
R
111 115anti-parallel
Strand 4
R
123 125anti-parallel
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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
R
132 137first strand
Strand 2
R
143 148anti-parallel
Strand 3
R
152 157anti-parallel
Strand 4
R
163 168anti-parallel
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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
R
176 179first strand
Strand 2
R
185 189anti-parallel
Strand 3
R
194 199anti-parallel
Strand 4
R
205 210anti-parallel
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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
R
221 222first strand
Strand 2
R
228 233anti-parallel
Strand 3
R
237 242anti-parallel
Strand 4
R
248 252anti-parallel
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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
R
273 276first strand
Strand 2
R
282 287anti-parallel
Strand 3
R
296 298anti-parallel
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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
T
299 300first strand
Strand 2
T
306 308anti-parallel
Strand 3
T
479 481anti-parallel
Strand 4
T
331 333anti-parallel
Strand 5
T
391 392anti-parallel
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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
T
316 317first strand
Strand 2
T
469 474anti-parallel
Strand 3
T
342 347anti-parallel
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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
T
373 374first strand
Strand 2
T
379 380anti-parallel
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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
T
448 451first strand
Strand 2
T
454 458anti-parallel
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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
O
12 14first strand
Strand 2
O
4 6anti-parallel
Strand 3
O
66 67parallel
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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
O
48 49first strand
Strand 2
O
42 45anti-parallel
Strand 3
O
69 70anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il