Analysis of interatomic Contacts of Structural Units in PDB entry:
6KJV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6KJV entry

There are 2 chains in PDB entry 6KJV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 136LEU 422
B
 SER 136LEU 422
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 46 helices in PDB entry 6KJV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
136 169Right-handed alpha
Helix 2
AA2
A
170 173Right-handed 310
Helix 3
AA3
A
174 200Right-handed alpha
Helix 4
AA4
A
223 257Right-handed alpha
Helix 5
AA5
A
1001 1011Right-handed alpha
Helix 6
AA6
A
1037 1048Right-handed alpha
Helix 7
AA7
A
1058 1079Right-handed alpha
Helix 8
AA8
A
1083 1090Right-handed alpha
Helix 9
AA9
A
1091 1105Right-handed alpha
Helix 10
AB1
A
1106 1111Right-handed alpha
Helix 11
AB2
A
1113 1122Right-handed alpha
Helix 12
AB3
A
1124 1134Right-handed alpha
Helix 13
AB4
A
1135 1141Right-handed alpha
Helix 14
AB5
A
1141 1155Right-handed alpha
Helix 15
AB6
A
1157 261Right-handed 310
Helix 16
AB7
A
262 274Right-handed alpha
Helix 17
AB8
A
274 291Right-handed alpha
Helix 18
AB9
A
303 305Right-handed 310
Helix 19
AC1
A
306 337Right-handed alpha
Helix 20
AC2
A
344 367Right-handed alpha
Helix 21
AC3
A
381 385Right-handed alpha
Helix 22
AC4
A
386 403Right-handed alpha
Helix 23
AC5
A
406 422Right-handed alpha
Helix 24
AC6
B
137 169Right-handed alpha
Helix 25
AC7
B
170 173Right-handed 310
Helix 26
AC8
B
174 201Right-handed alpha
Helix 27
AC9
B
223 257Right-handed alpha
Helix 28
AD1
B
1001 1011Right-handed alpha
Helix 29
AD2
B
1037 1048Right-handed alpha
Helix 30
AD3
B
1058 1079Right-handed alpha
Helix 31
AD4
B
1083 1090Right-handed alpha
Helix 32
AD5
B
1091 1105Right-handed alpha
Helix 33
AD6
B
1106 1111Right-handed alpha
Helix 34
AD7
B
1113 1122Right-handed alpha
Helix 35
AD8
B
1124 1134Right-handed alpha
Helix 36
AD9
B
1135 1141Right-handed alpha
Helix 37
AE1
B
1141 1155Right-handed alpha
Helix 38
AE2
B
1157 261Right-handed 310
Helix 39
AE3
B
262 274Right-handed alpha
Helix 40
AE4
B
274 291Right-handed alpha
Helix 41
AE5
B
303 305Right-handed 310
Helix 42
AE6
B
306 337Right-handed alpha
Helix 43
AE7
B
344 367Right-handed alpha
Helix 44
AE8
B
381 385Right-handed alpha
Helix 45
AE9
B
386 403Right-handed alpha
Helix 46
AF1
B
406 422Right-handed alpha
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There are 2 sheets in PDB entry 6KJV. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1013 1018first strand
Strand 2
A
1024 1027anti-parallel
Strand 3
A
1030 1031anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1013 1018first strand
Strand 2
B
1024 1027anti-parallel
Strand 3
B
1030 1031anti-parallel
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