Analysis of interatomic Contacts of Structural Units in PDB entry:
6KOT

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6KOT entry

There are 2 chains in PDB entry 6KOT (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 3	MET 606
B	GLN 4	ASP 605

There are 47 helices in PDB entry 6KOT. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	4	10	Right-handed alpha
Helix 2	AA2	A	33	37	Right-handed 310
Helix 3	AA3	A	51	64	Right-handed alpha
Helix 4	AA4	A	66	68	Right-handed 310
Helix 5	AA5	A	69	82	Right-handed alpha
Helix 6	AA6	A	106	112	Right-handed alpha
Helix 7	AA7	A	113	117	Right-handed 310
Helix 8	AA8	A	132	136	Right-handed 310
Helix 9	AA9	A	145	156	Right-handed alpha
Helix 10	AB1	A	166	176	Right-handed alpha
Helix 11	AB2	A	288	294	Right-handed alpha
Helix 12	AB3	A	312	318	Right-handed alpha
Helix 13	AB4	A	324	339	Right-handed alpha
Helix 14	AB5	A	376	388	Right-handed alpha
Helix 15	AB6	A	392	398	Right-handed alpha
Helix 16	AB7	A	404	408	Right-handed 310
Helix 17	AB8	A	409	416	Right-handed alpha
Helix 18	AB9	A	429	437	Right-handed alpha
Helix 19	AC1	A	454	466	Right-handed alpha
Helix 20	AC2	A	478	485	Right-handed 310
Helix 21	AC3	A	516	536	Right-handed alpha
Helix 22	AC4	A	556	565	Right-handed alpha
Helix 23	AC5	A	582	586	Right-handed 310
Helix 24	AC6	A	587	589	Right-handed 310
Helix 25	AC7	B	5	10	Right-handed alpha
Helix 26	AC8	B	33	37	Right-handed 310
Helix 27	AC9	B	51	64	Right-handed alpha
Helix 28	AD1	B	66	68	Right-handed 310
Helix 29	AD2	B	69	82	Right-handed alpha
Helix 30	AD3	B	106	112	Right-handed alpha
Helix 31	AD4	B	146	155	Right-handed alpha
Helix 32	AD5	B	166	176	Right-handed alpha
Helix 33	AD6	B	285	293	Right-handed alpha
Helix 34	AD7	B	308	311	Right-handed 310
Helix 35	AD8	B	312	318	Right-handed alpha
Helix 36	AD9	B	325	339	Right-handed alpha
Helix 37	AE1	B	376	389	Right-handed alpha
Helix 38	AE2	B	392	399	Right-handed alpha
Helix 39	AE3	B	405	408	Right-handed 310
Helix 40	AE4	B	409	416	Right-handed alpha
Helix 41	AE5	B	429	437	Right-handed alpha
Helix 42	AE6	B	454	466	Right-handed alpha
Helix 43	AE7	B	478	485	Right-handed 310
Helix 44	AE8	B	516	536	Right-handed alpha
Helix 45	AE9	B	556	565	Right-handed alpha
Helix 46	AF1	B	582	586	Right-handed 310
Helix 47	AF2	B	587	589	Right-handed 310

There are 10 sheets in PDB entry 6KOT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	141	143	first strand
Strand 2	A	122	127	parallel
Strand 3	A	100	105	parallel
Strand 4	A	161	165	parallel
Strand 5	A	11	19	parallel
Strand 6	A	181	190	parallel
Strand 7	A	219	228	anti-parallel
Strand 8	A	214	216	anti-parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	141	143	first strand
Strand 2	A	122	127	parallel
Strand 3	A	100	105	parallel
Strand 4	A	161	165	parallel
Strand 5	A	11	19	parallel
Strand 6	A	181	190	parallel
Strand 7	A	219	228	anti-parallel
Strand 8	A	205	210	anti-parallel
Strand 9	A	320	321	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	39	41	first strand
Strand 2	A	195	196	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	340	342	first strand
Strand 2	A	350	361	anti-parallel
Strand 3	A	539	553	anti-parallel
Strand 4	A	502	513	parallel
Strand 5	A	491	499	anti-parallel
Strand 6	A	473	475	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	573	576	first strand
Strand 2	A	591	594	anti-parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	141	143	first strand
Strand 2	B	123	127	parallel
Strand 3	B	101	105	parallel
Strand 4	B	161	165	parallel
Strand 5	B	11	20	parallel
Strand 6	B	181	191	parallel
Strand 7	B	219	228	anti-parallel
Strand 8	B	214	216	anti-parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	141	143	first strand
Strand 2	B	123	127	parallel
Strand 3	B	101	105	parallel
Strand 4	B	161	165	parallel
Strand 5	B	11	20	parallel
Strand 6	B	181	191	parallel
Strand 7	B	219	228	anti-parallel
Strand 8	B	205	210	anti-parallel
Strand 9	B	320	321	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	39	41	first strand
Strand 2	B	195	196	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	340	342	first strand
Strand 2	B	350	361	anti-parallel
Strand 3	B	539	553	anti-parallel
Strand 4	B	502	513	parallel
Strand 5	B	491	499	anti-parallel
Strand 6	B	473	475	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	573	576	first strand
Strand 2	B	591	594	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6KOT

Analysis of interatomic Contacts of Structural Units in PDB entry:
6KOT