Analysis of interatomic Contacts of Structural Units in PDB entry:
6KS0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6KS0 entry

There are 3 chains in PDB entry 6KS0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 0THR 373
H
 GLU 1ALA 119
L
 ASP 1ASN 107
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 6KS0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
101 105Right-handed 310
Helix 2
AA2
A
120 127Right-handed alpha
Helix 3
AA3
A
128 130Right-handed 310
Helix 4
AA4
A
134 157Right-handed alpha
Helix 5
AA5
A
165 193Right-handed alpha
Helix 6
AA6
A
194 196Right-handed 310
Helix 7
AA7
A
197 228Right-handed alpha
Helix 8
AA8
A
231 253Right-handed alpha
Helix 9
AA9
A
256 260Right-handed 310
Helix 10
AB1
A
263 276Right-handed alpha
Helix 11
AB2
A
278 289Right-handed alpha
Helix 12
AB3
A
290 296Right-handed alpha
Helix 13
AB4
A
299 320Right-handed alpha
Helix 14
AB5
A
335 365Right-handed alpha
Helix 15
AB6
H
28 32Right-handed 310
Helix 16
AB7
H
62 65Right-handed 310
Helix 17
AB8
H
87 91Right-handed 310
Helix 18
AB9
L
79 83Right-handed 310
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There are 6 sheets in PDB entry 6KS0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
3 6first strand
Strand 2
H
18 25anti-parallel
Strand 3
H
78 83anti-parallel
Strand 4
H
68 73anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
10 12first strand
Strand 2
H
112 116parallel
Strand 3
H
92 98anti-parallel
Strand 4
H
34 39anti-parallel
Strand 5
H
45 52anti-parallel
Strand 6
H
57 60anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
10 12first strand
Strand 2
H
112 116parallel
Strand 3
H
92 98anti-parallel
Strand 4
H
107 108anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
4 7first strand
Strand 2
L
19 25anti-parallel
Strand 3
L
70 75anti-parallel
Strand 4
L
62 67anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
10 14first strand
Strand 2
L
102 107parallel
Strand 3
L
84 90anti-parallel
Strand 4
L
33 38anti-parallel
Strand 5
L
45 49anti-parallel
Strand 6
L
53 54anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
10 14first strand
Strand 2
L
102 107parallel
Strand 3
L
84 90anti-parallel
Strand 4
L
97 98anti-parallel
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