Analysis of interatomic Contacts of Structural Units in PDB entry:
6KVA

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6KVA entry

There are 6 chains in PDB entry 6KVA (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
H	GLN 2	PRO 221
L	VAL 3	THR 219
h	GLN 2	PRO 221
l	VAL 3	THR 219
B	PHE 11	LYS 16
b	PHE 11	GLY 17

There are 20 helices in PDB entry 6KVA. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	H	63	66	Right-handed 310
Helix 2	AA2	H	88	92	Right-handed 310
Helix 3	AA3	H	164	166	Right-handed 310
Helix 4	AA4	H	195	199	Right-handed 310
Helix 5	AA5	H	209	212	Right-handed 310
Helix 6	AA6	L	29	33	Right-handed 310
Helix 7	AA7	L	74	76	Right-handed 310
Helix 8	AA8	L	87	91	Right-handed 310
Helix 9	AA9	L	131	137	Right-handed alpha
Helix 10	AB1	L	191	197	Right-handed alpha
Helix 11	AB2	h	28	33	Right-handed 310
Helix 12	AB3	h	63	66	Right-handed 310
Helix 13	AB4	h	88	92	Right-handed 310
Helix 14	AB5	h	164	166	Right-handed 310
Helix 15	AB6	h	195	197	Right-handed 310
Helix 16	AB7	h	209	212	Right-handed 310
Helix 17	AB8	l	29	33	Right-handed 310
Helix 18	AB9	l	87	91	Right-handed 310
Helix 19	AC1	l	131	137	Right-handed alpha
Helix 20	AC2	l	191	197	Right-handed alpha

There are 24 sheets in PDB entry 6KVA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	5	7	first strand
Strand 2	H	19	25	anti-parallel
Strand 3	H	79	84	anti-parallel
Strand 4	H	69	73	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	13	first strand
Strand 2	H	115	119	parallel
Strand 3	H	93	102	anti-parallel
Strand 4	H	35	40	anti-parallel
Strand 5	H	46	52	anti-parallel
Strand 6	H	59	61	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	59	61	first strand
Strand 2	H	46	52	anti-parallel
Strand 3	H	35	40	anti-parallel
Strand 4	H	93	102	anti-parallel
Strand 5	B	12	13	anti-parallel

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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	12	13	first strand
Strand 2	H	93	102	anti-parallel
Strand 3	H	106	111	anti-parallel
Strand 4	L	58	61	parallel
Strand 5	L	47	52	anti-parallel
Strand 6	L	35	40	anti-parallel
Strand 7	L	92	100	anti-parallel
Strand 8	L	110	114	anti-parallel
Strand 9	L	9	12	parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	13	first strand
Strand 2	H	115	119	parallel
Strand 3	H	93	102	anti-parallel
Strand 4	H	106	111	anti-parallel
Strand 5	L	58	61	parallel
Strand 6	L	47	52	anti-parallel
Strand 7	L	35	40	anti-parallel
Strand 8	L	92	100	anti-parallel
Strand 9	L	103	106	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	128	132	first strand
Strand 2	H	143	153	anti-parallel
Strand 3	H	184	193	anti-parallel
Strand 4	H	171	173	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	128	132	first strand
Strand 2	H	143	153	anti-parallel
Strand 3	H	184	193	anti-parallel
Strand 4	H	177	178	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	159	162	first strand
Strand 2	H	202	208	anti-parallel
Strand 3	H	213	219	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	5	first strand
Strand 2	L	18	24	anti-parallel
Strand 3	L	78	83	anti-parallel
Strand 4	L	68	73	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	124	128	first strand
Strand 2	L	140	149	anti-parallel
Strand 3	L	182	190	anti-parallel
Strand 4	L	169	171	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	124	128	first strand
Strand 2	L	140	149	anti-parallel
Strand 3	L	182	190	anti-parallel
Strand 4	L	175	176	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	163	164	first strand
Strand 2	L	155	160	anti-parallel
Strand 3	L	201	207	anti-parallel
Strand 4	L	210	216	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	4	7	first strand
Strand 2	h	19	26	anti-parallel
Strand 3	h	79	84	anti-parallel
Strand 4	h	69	74	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	11	13	first strand
Strand 2	h	115	119	parallel
Strand 3	h	93	102	anti-parallel
Strand 4	h	35	40	anti-parallel
Strand 5	h	47	52	anti-parallel
Strand 6	h	59	61	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	59	61	first strand
Strand 2	h	47	52	anti-parallel
Strand 3	h	35	40	anti-parallel
Strand 4	h	93	102	anti-parallel
Strand 5	b	12	13	anti-parallel

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There are 9 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	12	13	first strand
Strand 2	h	93	102	anti-parallel
Strand 3	h	106	111	anti-parallel
Strand 4	l	57	61	parallel
Strand 5	l	47	54	anti-parallel
Strand 6	l	35	40	anti-parallel
Strand 7	l	92	99	anti-parallel
Strand 8	l	110	114	anti-parallel
Strand 9	l	9	12	parallel

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There are 9 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	11	13	first strand
Strand 2	h	115	119	parallel
Strand 3	h	93	102	anti-parallel
Strand 4	h	106	111	anti-parallel
Strand 5	l	57	61	parallel
Strand 6	l	47	54	anti-parallel
Strand 7	l	35	40	anti-parallel
Strand 8	l	92	99	anti-parallel
Strand 9	l	104	106	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	128	132	first strand
Strand 2	h	143	153	anti-parallel
Strand 3	h	184	193	anti-parallel
Strand 4	h	171	173	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	128	132	first strand
Strand 2	h	143	153	anti-parallel
Strand 3	h	184	193	anti-parallel
Strand 4	h	177	178	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	159	162	first strand
Strand 2	h	202	208	anti-parallel
Strand 3	h	213	219	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	l	4	5	first strand
Strand 2	l	17	24	anti-parallel
Strand 3	l	78	84	anti-parallel
Strand 4	l	68	73	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	l	124	128	first strand
Strand 2	l	140	149	anti-parallel
Strand 3	l	182	190	anti-parallel
Strand 4	l	169	171	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	l	124	128	first strand
Strand 2	l	140	149	anti-parallel
Strand 3	l	182	190	anti-parallel
Strand 4	l	175	176	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	l	163	165	first strand
Strand 2	l	155	160	anti-parallel
Strand 3	l	201	207	anti-parallel
Strand 4	l	210	216	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6KVA

Analysis of interatomic Contacts of Structural Units in PDB entry:
6KVA