Analysis of interatomic Contacts of Structural Units in PDB entry:
6KVF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6KVF entry

There are 6 chains in PDB entry 6KVF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
H
 VAL 3PRO 222
A
 GLN 4GLU 220
L
 ALA 2PRO 218
C
 VAL 3THR 219
b
 PHE 11LYS 16
B
 PHE 14TRP 15
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 6KVF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
H
88 92Right-handed 310
Helix 2
AA2
H
195 197Right-handed 310
Helix 3
AA3
H
210 212Right-handed 310
Helix 4
AA4
A
88 92Right-handed 310
Helix 5
AA5
A
209 212Right-handed 310
Helix 6
AA6
L
29 33Right-handed 310
Helix 7
AA7
L
87 91Right-handed 310
Helix 8
AA8
L
131 137Right-handed alpha
Helix 9
AA9
L
191 198Right-handed alpha
Helix 10
AB1
C
29 33Right-handed 310
Helix 11
AB2
C
87 91Right-handed 310
Helix 12
AB3
C
131 137Right-handed alpha
Helix 13
AB4
C
191 198Right-handed alpha
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There are 22 sheets in PDB entry 6KVF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
5 7first strand
Strand 2
H
19 25anti-parallel
Strand 3
H
79 84anti-parallel
Strand 4
H
69 74anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
11 13first strand
Strand 2
H
115 119parallel
Strand 3
H
93 102anti-parallel
Strand 4
H
35 40anti-parallel
Strand 5
H
46 52anti-parallel
Strand 6
H
59 61anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
59 61first strand
Strand 2
H
46 52anti-parallel
Strand 3
H
35 40anti-parallel
Strand 4
H
93 102anti-parallel
Strand 5
b
12 13anti-parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
b
12 13first strand
Strand 2
H
93 102anti-parallel
Strand 3
H
106 111anti-parallel
Strand 4
L
58 61parallel
Strand 5
L
47 52anti-parallel
Strand 6
L
35 40anti-parallel
Strand 7
L
92 99anti-parallel
Strand 8
L
110 114anti-parallel
Strand 9
L
9 12parallel
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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
11 13first strand
Strand 2
H
115 119parallel
Strand 3
H
93 102anti-parallel
Strand 4
H
106 111anti-parallel
Strand 5
L
58 61parallel
Strand 6
L
47 52anti-parallel
Strand 7
L
35 40anti-parallel
Strand 8
L
92 99anti-parallel
Strand 9
L
104 106anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
128 132first strand
Strand 2
H
143 153anti-parallel
Strand 3
H
184 193anti-parallel
Strand 4
H
171 173anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
128 132first strand
Strand 2
H
143 153anti-parallel
Strand 3
H
184 193anti-parallel
Strand 4
H
177 178anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
158 162first strand
Strand 2
H
203 208anti-parallel
Strand 3
H
213 218anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 7first strand
Strand 2
A
19 25anti-parallel
Strand 3
A
79 84anti-parallel
Strand 4
A
69 74anti-parallel
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There are 10 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 13first strand
Strand 2
A
115 119parallel
Strand 3
A
93 102anti-parallel
Strand 4
A
106 111anti-parallel
Strand 5
C
58 61parallel
Strand 6
C
47 52anti-parallel
Strand 7
C
35 40anti-parallel
Strand 8
C
92 100anti-parallel
Strand 9
C
110 114anti-parallel
Strand 10
C
9 12parallel
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There are 10 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 61first strand
Strand 2
A
46 52anti-parallel
Strand 3
A
35 40anti-parallel
Strand 4
A
93 102anti-parallel
Strand 5
A
106 111anti-parallel
Strand 6
C
58 61parallel
Strand 7
C
47 52anti-parallel
Strand 8
C
35 40anti-parallel
Strand 9
C
92 100anti-parallel
Strand 10
C
103 106anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 132first strand
Strand 2
A
143 153anti-parallel
Strand 3
A
184 193anti-parallel
Strand 4
A
171 173anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 132first strand
Strand 2
A
143 153anti-parallel
Strand 3
A
184 193anti-parallel
Strand 4
A
177 178anti-parallel
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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
159 162first strand
Strand 2
A
203 208anti-parallel
Strand 3
A
213 218anti-parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
4 5first strand
Strand 2
L
18 24anti-parallel
Strand 3
L
78 83anti-parallel
Strand 4
L
68 73anti-parallel
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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
124 128first strand
Strand 2
L
140 149anti-parallel
Strand 3
L
182 190anti-parallel
Strand 4
L
169 171anti-parallel
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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
124 128first strand
Strand 2
L
140 149anti-parallel
Strand 3
L
182 190anti-parallel
Strand 4
L
175 176anti-parallel
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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
163 165first strand
Strand 2
L
155 160anti-parallel
Strand 3
L
201 207anti-parallel
Strand 4
L
210 216anti-parallel
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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
4 5first strand
Strand 2
C
18 24anti-parallel
Strand 3
C
78 83anti-parallel
Strand 4
C
68 73anti-parallel
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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
124 128first strand
Strand 2
C
140 149anti-parallel
Strand 3
C
182 190anti-parallel
Strand 4
C
169 171anti-parallel
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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
124 128first strand
Strand 2
C
140 149anti-parallel
Strand 3
C
182 190anti-parallel
Strand 4
C
175 176anti-parallel
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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
163 164first strand
Strand 2
C
155 160anti-parallel
Strand 3
C
201 207anti-parallel
Strand 4
C
210 216anti-parallel
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