Analysis of interatomic Contacts of Structural Units in PDB entry:
6KZQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6KZQ entry

There are 3 chains in PDB entry 6KZQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 277VAL 581
F
 VAL 391LEU 393
F
 THR 395ASP 397
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 6KZQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
288 313Right-handed alpha
Helix 2
AA2
A
319 324Right-handed alpha
Helix 3
AA3
A
327 331Right-handed 310
Helix 4
AA4
A
379 381Right-handed 310
Helix 5
AA5
A
382 393Right-handed alpha
Helix 6
AA6
A
476 496Right-handed alpha
Helix 7
AA7
A
519 539Right-handed alpha
Helix 8
AA8
A
542 551Right-handed alpha
Helix 9
AA9
A
560 578Right-handed alpha
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There are 3 sheets in PDB entry 6KZQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
286 287first strand
Strand 2
A
540 541anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
343 345first strand
Strand 2
A
357 365anti-parallel
Strand 3
A
368 375anti-parallel
Strand 4
A
511 514parallel
Strand 5
A
397 400parallel
Strand 6
A
456 465parallel
Strand 7
A
442 451anti-parallel
Strand 8
A
429 438anti-parallel
Strand 9
A
423 426anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
405 406first strand
Strand 2
A
409 410anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il