Analysis of interatomic Contacts of Structural Units in PDB entry:
6L8I


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6L8I entry

There is 1 chain in PDB entry 6L8I (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLU 126ILE 580
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 6L8I. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
128 140Right-handed alpha
Helix 2
AA2
A
157 166Right-handed alpha
Helix 3
AA3
A
168 170Right-handed 310
Helix 4
AA4
A
175 186Right-handed alpha
Helix 5
AA5
A
193 205Right-handed alpha
Helix 6
AA6
A
206 208Right-handed 310
Helix 7
AA7
A
209 238Right-handed alpha
Helix 8
AA8
A
243 261Right-handed alpha
Helix 9
AA9
A
271 287Right-handed alpha
Helix 10
AB1
A
306 335Right-handed alpha
Helix 11
AB2
A
350 358Right-handed alpha
Helix 12
AB3
A
363 396Right-handed alpha
Helix 13
AB4
A
396 411Right-handed alpha
Helix 14
AB5
A
417 424Right-handed alpha
Helix 15
AB6
A
424 438Right-handed alpha
Helix 16
AB7
A
469 475Right-handed alpha
Helix 17
AB8
A
486 490Right-handed 310
Helix 18
AB9
A
511 515Right-handed 310
Helix 19
AC1
A
518 536Right-handed alpha
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There are 3 sheets in PDB entry 6L8I. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
142 147first strand
Strand 2
A
150 155anti-parallel
Strand 3
A
464 468parallel
Strand 4
A
443 448anti-parallel
Strand 5
A
172 173anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
241 242first strand
Strand 2
A
563 568anti-parallel
Strand 3
A
537 541anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
452 454first strand
Strand 2
A
457 459anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il