Analysis of interatomic Contacts of Structural Units in PDB entry:
6LDI

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6LDI entry

There are 3 chains in PDB entry 6LDI (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 6	ARG 235
B	THR 6	VAL 232
C	TYR 3	ALA 945

There are141 helices in PDB entry 6LDI. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	34	39	Right-handed alpha
Helix 2	AA2	A	43	48	Right-handed alpha
Helix 3	AA3	A	77	87	Right-handed alpha
Helix 4	AA4	A	154	161	Right-handed alpha
Helix 5	AA5	A	212	228	Right-handed alpha
Helix 6	AA6	A	228	233	Right-handed alpha
Helix 7	AA7	B	35	43	Right-handed alpha
Helix 8	AA8	B	43	48	Right-handed alpha
Helix 9	AA9	B	79	87	Right-handed alpha
Helix 10	AB1	B	155	162	Right-handed alpha
Helix 11	AB2	B	214	227	Right-handed alpha
Helix 12	AB3	C	28	33	Right-handed alpha
Helix 13	AB4	C	35	40	Right-handed alpha
Helix 14	AB5	C	48	57	Right-handed alpha
Helix 15	AB6	C	81	89	Right-handed alpha
Helix 16	AB7	C	198	201	Right-handed 310
Helix 17	AB8	C	207	212	Right-handed alpha
Helix 18	AB9	C	218	225	Right-handed alpha
Helix 19	AC1	C	270	280	Right-handed alpha
Helix 20	AC2	C	318	329	Right-handed alpha
Helix 21	AC3	C	345	354	Right-handed alpha
Helix 22	AC4	C	362	371	Right-handed alpha
Helix 23	AC5	C	377	390	Right-handed alpha
Helix 24	AC6	C	404	409	Right-handed alpha
Helix 25	AC7	C	423	438	Right-handed alpha
Helix 26	AC8	C	455	479	Right-handed alpha
Helix 27	AC9	C	495	509	Right-handed alpha
Helix 28	AD1	C	520	525	Right-handed alpha
Helix 29	AD2	C	551	555	Right-handed 310
Helix 30	AD3	C	610	614	Right-handed 310
Helix 31	AD4	C	670	674	Right-handed 310
Helix 32	AD5	C	677	685	Right-handed alpha
Helix 33	AD6	C	686	689	Right-handed 310
Helix 34	AD7	C	704	712	Right-handed alpha
Helix 35	AD8	C	819	825	Right-handed alpha
Helix 36	AD9	C	896	906	Right-handed alpha
Helix 37	AE1	C	943	983	Right-handed alpha
Helix 38	AE2	C	987	992	Right-handed alpha
Helix 39	AE3	C	1005	1038	Right-handed alpha
Helix 40	AE4	C	1081	1085	Right-handed 310
Helix 41	AE5	C	1099	1103	Right-handed 310
Helix 42	AE6	C	1109	1134	Right-handed alpha
Helix 43	AE7	C	1140	1149	Right-handed alpha
Helix 44	AE8	C	1167	1175	Right-handed alpha
Helix 45	AE9	C	1191	1200	Right-handed alpha
Helix 46	AF1	C	1271	1282	Right-handed alpha
Helix 47	AF2	C	1283	1290	Right-handed alpha
Helix 48	AF3	C	1300	1311	Right-handed alpha
Helix 49	AF4	C	1322	1332	Right-handed alpha
Helix 50	AF5	D	26	33	Right-handed alpha
Helix 51	AF6	D	58	63	Right-handed alpha
Helix 52	AF7	D	94	100	Right-handed 310
Helix 53	AF8	D	114	119	Right-handed alpha
Helix 54	AF9	D	124	129	Right-handed alpha
Helix 55	AG1	D	131	140	Right-handed alpha
Helix 56	AG2	D	163	173	Right-handed alpha
Helix 57	AG3	D	181	191	Right-handed alpha
Helix 58	AG4	D	193	206	Right-handed alpha
Helix 59	AG5	D	216	231	Right-handed alpha
Helix 60	AG6	D	233	236	Right-handed 310
Helix 61	AG7	D	264	283	Right-handed alpha
Helix 62	AG8	D	288	308	Right-handed alpha
Helix 63	AG9	D	309	312	Right-handed 310
Helix 64	AH1	D	327	331	Right-handed 310
Helix 65	AH2	D	332	335	Right-handed 310
Helix 66	AH3	D	336	342	Right-handed alpha
Helix 67	AH4	D	369	377	Right-handed alpha
Helix 68	AH5	D	377	388	Right-handed alpha
Helix 69	AH6	D	393	403	Right-handed alpha
Helix 70	AH7	D	411	417	Right-handed alpha
Helix 71	AH8	D	430	432	Right-handed 310
Helix 72	AH9	D	453	458	Right-handed alpha
Helix 73	AI1	D	503	514	Right-handed alpha
Helix 74	AI2	D	529	532	Right-handed 310
Helix 75	AI3	D	533	539	Right-handed alpha
Helix 76	AI4	D	574	580	Right-handed alpha
Helix 77	AI5	D	588	592	Right-handed 310
Helix 78	AI6	D	598	613	Right-handed alpha
Helix 79	AI7	D	614	629	Right-handed alpha
Helix 80	AI8	D	629	634	Right-handed alpha
Helix 81	AI9	D	650	670	Right-handed alpha
Helix 82	AJ1	D	674	702	Right-handed alpha
Helix 83	AJ2	D	723	728	Right-handed alpha
Helix 84	AJ3	D	769	775	Right-handed alpha
Helix 85	AJ4	D	775	802	Right-handed alpha
Helix 86	AJ5	D	834	839	Right-handed alpha
Helix 87	AJ6	D	868	875	Right-handed alpha
Helix 88	AJ7	D	884	888	Right-handed 310
Helix 89	AJ8	D	914	925	Right-handed alpha
Helix 90	AJ9	D	926	930	Right-handed 310
Helix 91	AK1	D	1138	1146	Right-handed alpha
Helix 92	AK2	D	1216	1223	Right-handed alpha
Helix 93	AK3	D	1225	1228	Right-handed 310
Helix 94	AK4	D	1229	1234	Right-handed alpha
Helix 95	AK5	D	1236	1239	Right-handed 310
Helix 96	AK6	D	1240	1245	Right-handed alpha
Helix 97	AK7	D	1250	1261	Right-handed alpha
Helix 98	AK8	D	1281	1286	Right-handed alpha
Helix 99	AK9	D	1319	1324	Right-handed alpha
Helix 100	AL1	D	1327	1335	Right-handed alpha
Helix 101	AL2	D	1348	1353	Right-handed alpha
Helix 102	AL3	D	1360	1372	Right-handed alpha
Helix 103	AL4	E	6	14	Right-handed alpha
Helix 104	AL5	E	15	30	Right-handed alpha
Helix 105	AL6	E	45	56	Right-handed alpha
Helix 106	AL7	E	60	77	Right-handed alpha
Helix 107	AL8	F	96	106	Right-handed alpha
Helix 108	AL9	F	112	134	Right-handed alpha
Helix 109	AM1	F	137	153	Right-handed alpha
Helix 110	AM2	F	213	221	Right-handed alpha
Helix 111	AM3	F	222	235	Right-handed alpha
Helix 112	AM4	F	244	255	Right-handed alpha
Helix 113	AM5	F	262	294	Right-handed alpha
Helix 114	AM6	F	302	307	Right-handed alpha
Helix 115	AM7	F	313	319	Right-handed alpha
Helix 116	AM8	F	320	322	Right-handed 310
Helix 117	AM9	F	333	352	Right-handed alpha
Helix 118	AN1	F	355	383	Right-handed alpha
Helix 119	AN2	F	383	391	Right-handed alpha
Helix 120	AN3	F	400	419	Right-handed alpha
Helix 121	AN4	F	426	446	Right-handed alpha
Helix 122	AN5	F	453	475	Right-handed alpha
Helix 123	AN6	F	479	488	Right-handed alpha
Helix 124	AN7	F	490	501	Right-handed alpha
Helix 125	AN8	F	518	522	Right-handed 310
Helix 126	AN9	F	535	548	Right-handed alpha
Helix 127	AO1	F	554	563	Right-handed alpha
Helix 128	AO2	F	572	581	Right-handed alpha
Helix 129	AO3	F	584	600	Right-handed alpha
Helix 130	AO4	F	605	609	Right-handed 310
Helix 131	AO5	G	5	10	Right-handed alpha
Helix 132	AO6	G	13	23	Right-handed alpha
Helix 133	AO7	G	40	57	Right-handed alpha
Helix 134	AO8	G	61	72	Right-handed alpha
Helix 135	AO9	G	77	107	Right-handed alpha
Helix 136	AP1	H	5	11	Right-handed alpha
Helix 137	AP2	H	13	24	Right-handed alpha
Helix 138	AP3	H	40	56	Right-handed alpha
Helix 139	AP4	H	62	71	Right-handed alpha
Helix 140	AP5	H	77	110	Right-handed alpha
Helix 141	AP6	H	120	128	Right-handed alpha

There are 47 sheets in PDB entry 6LDI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	13	18	first strand
Strand 2	A	24	31	anti-parallel
Strand 3	A	199	207	anti-parallel
Strand 4	A	180	189	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	115	116	first strand
Strand 2	A	98	105	anti-parallel
Strand 3	A	139	149	anti-parallel
Strand 4	A	53	61	anti-parallel
Strand 5	A	171	172	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	108	111	first strand
Strand 2	A	129	133	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	152	153	first strand
Strand 2	A	175	176	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	17	18	first strand
Strand 2	B	23	31	anti-parallel
Strand 3	B	199	207	anti-parallel
Strand 4	B	180	189	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	98	104	first strand
Strand 2	B	140	150	anti-parallel
Strand 3	B	52	61	anti-parallel
Strand 4	B	170	172	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	90	91	first strand
Strand 2	B	122	123	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	152	153	first strand
Strand 2	B	175	176	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	13	14	first strand
Strand 2	C	1182	1183	parallel
Strand 3	C	700	701	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	59	60	first strand
Strand 2	C	66	75	anti-parallel
Strand 3	C	93	104	anti-parallel
Strand 4	C	116	128	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	136	138	first strand
Strand 2	C	141	145	anti-parallel
Strand 3	C	512	514	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	451	453	first strand
Strand 2	C	147	151	anti-parallel
Strand 3	C	530	531	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	154	159	first strand
Strand 2	C	172	177	anti-parallel
Strand 3	C	184	187	anti-parallel
Strand 4	C	195	196	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	284	286	first strand
Strand 2	C	236	240	anti-parallel
Strand 3	C	227	233	anti-parallel
Strand 4	C	333	336	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	250	251	first strand
Strand 2	C	267	268	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	295	296	first strand
Strand 2	C	316	317	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	580	581	first strand
Strand 2	C	587	595	anti-parallel
Strand 3	C	598	606	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	580	581	first strand
Strand 2	C	587	595	anti-parallel
Strand 3	C	652	653	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	616	617	first strand
Strand 2	C	634	638	anti-parallel
Strand 3	C	641	645	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	716	717	first strand
Strand 2	C	782	785	anti-parallel
Strand 3	C	768	769	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	748	752	first strand
Strand 2	C	731	736	anti-parallel
Strand 3	C	722	727	anti-parallel
Strand 4	C	776	777	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	757	758	first strand
Strand 2	C	764	765	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	789	790	first strand
Strand 2	C	793	794	anti-parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1066	1067	first strand
Strand 2	C	1225	1234	anti-parallel
Strand 3	C	798	804	anti-parallel
Strand 4	C	1096	1098	parallel
Strand 5	C	815	818	anti-parallel
Strand 6	C	1075	1079	parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1066	1067	first strand
Strand 2	C	1225	1234	anti-parallel
Strand 3	C	1209	1210	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	830	832	first strand
Strand 2	C	1056	1058	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	835	841	first strand
Strand 2	C	1046	1053	anti-parallel
Strand 3	C	930	935	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	849	850	first strand
Strand 2	C	886	889	anti-parallel
Strand 3	C	913	915	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	882	884	first strand
Strand 2	C	918	919	anti-parallel

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There are 6 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1244	1246	first strand
Strand 2	D	350	357	anti-parallel
Strand 3	D	465	469	anti-parallel
Strand 4	D	421	424	anti-parallel
Strand 5	D	434	439	anti-parallel
Strand 6	D	365	366	parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1244	1246	first strand
Strand 2	D	350	357	anti-parallel
Strand 3	D	446	449	parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1269	1270	first strand
Strand 2	D	345	346	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1335	1339	first strand
Strand 2	D	20	24	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	34	37	first strand
Strand 2	D	102	112	parallel
Strand 3	D	238	244	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	159	160	first strand
Strand 2	D	144	149	anti-parallel
Strand 3	D	176	179	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	252	254	first strand
Strand 2	D	260	262	anti-parallel
Strand 3	F	505	506	parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	548	556	first strand
Strand 2	D	564	572	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	704	706	first strand
Strand 2	D	714	716	anti-parallel

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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	949	951	first strand
Strand 2	D	1016	1019	anti-parallel
Strand 3	D	1002	1003	anti-parallel

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There are 3 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	957	959	first strand
Strand 2	D	981	985	anti-parallel
Strand 3	D	991	996	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	965	967	first strand
Strand 2	D	973	975	anti-parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1024	1026	first strand
Strand 2	D	1123	1125	anti-parallel

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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1033	1034	first strand
Strand 2	D	1114	1115	anti-parallel

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There are 2 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1077	1078	first strand
Strand 2	D	1099	1100	anti-parallel

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There are 2 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1089	1090	first strand
Strand 2	D	1093	1096	anti-parallel

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There are 4 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1187	1189	first strand
Strand 2	D	1174	1178	anti-parallel
Strand 3	D	1161	1165	anti-parallel
Strand 4	D	1203	1204	anti-parallel

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There are 3 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1277	1279	first strand
Strand 2	D	1263	1266	anti-parallel
Strand 3	D	1302	1304	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6LDI

Analysis of interatomic Contacts of Structural Units in PDB entry:
6LDI