Analysis of interatomic Contacts of Structural Units in PDB entry:
6LN2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6LN2 entry

There are 3 chains in PDB entry 6LN2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
THR 29ARG 421
B
GLN 1CYS 213
C
GLU 1LYS 226
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 6LN2. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
33 53Right-handed alpha
Helix 2
AA2
A
89 94Right-handed 310
Helix 3
AA3
A
136 169Right-handed alpha
Helix 4
AA4
A
170 173Right-handed 310
Helix 5
AA5
A
174 206Right-handed alpha
Helix 6
AA6
A
210 224Right-handed alpha
Helix 7
AA7
A
225 257Right-handed alpha
Helix 8
AA8
A
1029 1033Right-handed 310
Helix 9
AA9
A
1045 1049Right-handed 310
Helix 10
AB1
A
1054 274Right-handed alpha
Helix 11
AB2
A
274 291Right-handed alpha
Helix 12
AB3
A
306 337Right-handed alpha
Helix 13
AB4
A
344 371Right-handed alpha
Helix 14
AB5
A
372 374Right-handed 310
Helix 15
AB6
A
376 389Right-handed alpha
Helix 16
AB7
A
393 403Right-handed alpha
Helix 17
AB8
A
406 421Right-handed alpha
Helix 18
AB9
B
78 82Right-handed 310
Helix 19
AC1
B
182 187Right-handed alpha
Helix 20
AC2
C
62 65Right-handed 310
Helix 21
AC3
C
87 91Right-handed 310
Helix 22
AC4
C
197 203Right-handed 310
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There are 11 sheets in PDB entry 6LN2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
79 83first strand
Strand 2
A
100 104anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
4 5first strand
Strand 2
B
19 29anti-parallel
Strand 3
B
62 74anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
10 13first strand
Strand 2
B
101 105parallel
Strand 3
B
84 88anti-parallel
Strand 4
B
33 37anti-parallel
Strand 5
B
44 48anti-parallel
Strand 6
B
52 53anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
113 117first strand
Strand 2
B
128 138anti-parallel
Strand 3
B
172 181anti-parallel
Strand 4
B
158 162anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
152 153first strand
Strand 2
B
144 149anti-parallel
Strand 3
B
190 196anti-parallel
Strand 4
B
204 209anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
5 6first strand
Strand 2
C
18 23anti-parallel
Strand 3
C
78 83anti-parallel
Strand 4
C
68 73anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
10 12first strand
Strand 2
C
119 123parallel
Strand 3
C
92 101anti-parallel
Strand 4
C
34 39anti-parallel
Strand 5
C
46 51anti-parallel
Strand 6
C
58 60anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
10 12first strand
Strand 2
C
119 123parallel
Strand 3
C
92 101anti-parallel
Strand 4
C
110 115anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
132 135first strand
Strand 2
C
148 157anti-parallel
Strand 3
C
188 196anti-parallel
Strand 4
C
175 177anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
132 135first strand
Strand 2
C
148 157anti-parallel
Strand 3
C
188 196anti-parallel
Strand 4
C
181 182anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
163 166first strand
Strand 2
C
208 212anti-parallel
Strand 3
C
217 220anti-parallel
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